Hb_004108_200

Information

Type -
Description -
Location Contig4108: 152306-153268
Sequence    

Annotation

kegg
ID rcu:RCOM_0176040
description ATP binding protein, putative (EC:2.5.1.8)
nr
ID XP_012092487.1
description PREDICTED: adenylate isopentenyltransferase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q93WC9
description Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis thaliana GN=IPT3 PE=1 SV=1
trembl
ID B9T495
description ATP binding protein, putative (Fragment) OS=Ricinus communis GN=RCOM_0176040 PE=3 SV=1
Gene Ontology
ID GO:0008033
description adenylate isopentenyltransferase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_200 0.0 - - PREDICTED: adenylate isopentenyltransferase 3, chloroplastic [Jatropha curcas]
2 Hb_004162_030 0.1043955361 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Jatropha curcas]
3 Hb_001031_020 0.1354418027 - - hypothetical protein VITISV_000631 [Vitis vinifera]
4 Hb_000635_170 0.1379442678 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000045_110 0.151721509 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
6 Hb_008931_020 0.1572711779 - - Receptor like protein 46, putative [Theobroma cacao]
7 Hb_006717_020 0.1673103955 - - calcium-dependent protein kinase [Hevea brasiliensis]
8 Hb_028487_080 0.1696119542 - - Pectinesterase-1 precursor, putative [Ricinus communis]
9 Hb_000563_380 0.1769651675 - - hypothetical protein CICLE_v10007206mg [Citrus clementina]
10 Hb_004767_040 0.1837134224 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
11 Hb_009252_140 0.187568159 - - Spotted leaf protein, putative [Ricinus communis]
12 Hb_001405_180 0.1876279453 - - zinc finger protein, putative [Ricinus communis]
13 Hb_039757_010 0.1878408667 - - -
14 Hb_000426_060 0.1881762144 - - hypothetical protein CISIN_1g048192mg, partial [Citrus sinensis]
15 Hb_005588_150 0.1882384519 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002851_050 0.1891109297 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
17 Hb_000994_090 0.190123677 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
18 Hb_013057_010 0.1904777894 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
19 Hb_000426_070 0.1909472484 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
20 Hb_000592_040 0.1911088139 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004108_200 Hb_004108_200 Hb_004162_030 Hb_004162_030 Hb_004108_200--Hb_004162_030 Hb_001031_020 Hb_001031_020 Hb_004108_200--Hb_001031_020 Hb_000635_170 Hb_000635_170 Hb_004108_200--Hb_000635_170 Hb_000045_110 Hb_000045_110 Hb_004108_200--Hb_000045_110 Hb_008931_020 Hb_008931_020 Hb_004108_200--Hb_008931_020 Hb_006717_020 Hb_006717_020 Hb_004108_200--Hb_006717_020 Hb_083862_010 Hb_083862_010 Hb_004162_030--Hb_083862_010 Hb_004162_030--Hb_001031_020 Hb_161045_010 Hb_161045_010 Hb_004162_030--Hb_161045_010 Hb_002422_030 Hb_002422_030 Hb_004162_030--Hb_002422_030 Hb_011805_060 Hb_011805_060 Hb_004162_030--Hb_011805_060 Hb_000563_380 Hb_000563_380 Hb_001031_020--Hb_000563_380 Hb_028487_080 Hb_028487_080 Hb_001031_020--Hb_028487_080 Hb_001031_020--Hb_008931_020 Hb_001031_020--Hb_000635_170 Hb_000635_170--Hb_008931_020 Hb_013057_010 Hb_013057_010 Hb_000635_170--Hb_013057_010 Hb_000336_170 Hb_000336_170 Hb_000635_170--Hb_000336_170 Hb_000635_170--Hb_028487_080 Hb_000635_170--Hb_000563_380 Hb_000635_170--Hb_000045_110 Hb_000045_110--Hb_008931_020 Hb_004767_040 Hb_004767_040 Hb_000045_110--Hb_004767_040 Hb_001405_180 Hb_001405_180 Hb_000045_110--Hb_001405_180 Hb_039757_010 Hb_039757_010 Hb_000045_110--Hb_039757_010 Hb_000426_060 Hb_000426_060 Hb_000045_110--Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_000045_110--Hb_002851_050 Hb_011671_290 Hb_011671_290 Hb_008931_020--Hb_011671_290 Hb_008931_020--Hb_000563_380 Hb_000959_290 Hb_000959_290 Hb_008931_020--Hb_000959_290 Hb_002572_060 Hb_002572_060 Hb_008931_020--Hb_002572_060 Hb_000892_040 Hb_000892_040 Hb_006717_020--Hb_000892_040 Hb_002218_060 Hb_002218_060 Hb_006717_020--Hb_002218_060 Hb_006717_020--Hb_001031_020 Hb_001821_070 Hb_001821_070 Hb_006717_020--Hb_001821_070 Hb_080873_010 Hb_080873_010 Hb_006717_020--Hb_080873_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.22311 0 0.593529 0.0869147 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.340941

CAGE analysis