Hb_001821_070

Information

Type -
Description -
Location Contig1821: 62225-62791
Sequence    

Annotation

kegg
ID tcc:TCM_038456
description hypothetical protein
nr
ID XP_007013920.1
description Uncharacterized protein TCM_038456 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GWP4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_038456 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001821_070 0.0 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
2 Hb_000846_020 0.0642542646 - - cytochrome P450, putative [Ricinus communis]
3 Hb_015473_020 0.0862981672 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
4 Hb_028487_080 0.0921564545 - - Pectinesterase-1 precursor, putative [Ricinus communis]
5 Hb_005529_050 0.1089438251 - - PREDICTED: cytochrome P450 94B3-like [Nelumbo nucifera]
6 Hb_000876_060 0.1180490914 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000501_180 0.1385697794 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
8 Hb_004096_040 0.1405937283 - - cytochrome P450, putative [Ricinus communis]
9 Hb_027556_080 0.1446406578 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
10 Hb_000522_020 0.1503352181 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
11 Hb_000635_170 0.1644863792 - - cytochrome P450, putative [Ricinus communis]
12 Hb_002864_040 0.1654581955 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
13 Hb_001985_010 0.1669014791 - - conserved hypothetical protein [Ricinus communis]
14 Hb_163950_060 0.1678315255 - - multidrug resistance pump, putative [Ricinus communis]
15 Hb_000892_040 0.1715264655 - - -
16 Hb_011980_020 0.1749877515 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001031_020 0.17631464 - - hypothetical protein VITISV_000631 [Vitis vinifera]
18 Hb_000563_380 0.1792926609 - - hypothetical protein CICLE_v10007206mg [Citrus clementina]
19 Hb_006717_020 0.1808734692 - - calcium-dependent protein kinase [Hevea brasiliensis]
20 Hb_000336_170 0.1811191642 - - Polcalcin Jun o, putative [Ricinus communis]

Gene co-expression network

sample Hb_001821_070 Hb_001821_070 Hb_000846_020 Hb_000846_020 Hb_001821_070--Hb_000846_020 Hb_015473_020 Hb_015473_020 Hb_001821_070--Hb_015473_020 Hb_028487_080 Hb_028487_080 Hb_001821_070--Hb_028487_080 Hb_005529_050 Hb_005529_050 Hb_001821_070--Hb_005529_050 Hb_000876_060 Hb_000876_060 Hb_001821_070--Hb_000876_060 Hb_000501_180 Hb_000501_180 Hb_001821_070--Hb_000501_180 Hb_000846_020--Hb_000876_060 Hb_000846_020--Hb_015473_020 Hb_000846_020--Hb_005529_050 Hb_004096_040 Hb_004096_040 Hb_000846_020--Hb_004096_040 Hb_000846_020--Hb_028487_080 Hb_015473_020--Hb_028487_080 Hb_015473_020--Hb_005529_050 Hb_000522_020 Hb_000522_020 Hb_015473_020--Hb_000522_020 Hb_015473_020--Hb_000501_180 Hb_028487_080--Hb_005529_050 Hb_001031_020 Hb_001031_020 Hb_028487_080--Hb_001031_020 Hb_000635_170 Hb_000635_170 Hb_028487_080--Hb_000635_170 Hb_027556_080 Hb_027556_080 Hb_005529_050--Hb_027556_080 Hb_005529_050--Hb_004096_040 Hb_005529_050--Hb_000876_060 Hb_000876_060--Hb_004096_040 Hb_002864_040 Hb_002864_040 Hb_000876_060--Hb_002864_040 Hb_000876_060--Hb_015473_020 Hb_000501_180--Hb_000522_020 Hb_007590_040 Hb_007590_040 Hb_000501_180--Hb_007590_040 Hb_000892_040 Hb_000892_040 Hb_000501_180--Hb_000892_040 Hb_002221_020 Hb_002221_020 Hb_000501_180--Hb_002221_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.51915 0 0.0540067 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.331302

CAGE analysis