Hb_116349_050

Information

Type -
Description -
Location Contig116349: 28787-31244
Sequence    

Annotation

kegg
ID pop:POPTR_0010s04750g
description formin homology 2 domain-containing family protein
nr
ID XP_006378202.1
description formin homology 2 domain-containing family protein [Populus trichocarpa]
swissprot
ID O04532
description Formin-like protein 8 OS=Arabidopsis thaliana GN=FH8 PE=1 SV=1
trembl
ID U5G0U8
description Formin-like protein OS=Populus trichocarpa GN=POPTR_0010s04750g PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_050 0.0 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
2 Hb_000172_300 0.0997260208 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
3 Hb_174829_040 0.1030381804 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
4 Hb_000414_100 0.1163523667 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
5 Hb_002042_190 0.1188297795 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
6 Hb_048653_040 0.1221384075 - - ankyrin repeat family protein [Populus trichocarpa]
7 Hb_000039_100 0.1247127739 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
8 Hb_000142_010 0.1252537419 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
9 Hb_001437_200 0.1314647298 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
10 Hb_075449_030 0.1382357451 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
11 Hb_000336_160 0.1410838563 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000210_150 0.1487354218 - - PREDICTED: protein YLS9-like [Jatropha curcas]
13 Hb_000181_080 0.1500186861 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
14 Hb_005081_060 0.1511668207 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
15 Hb_013057_030 0.1523139131 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000627_140 0.1538691367 - - ATP binding protein, putative [Ricinus communis]
17 Hb_004531_010 0.1585279858 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
18 Hb_002311_490 0.1617642536 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
19 Hb_007810_130 0.161816406 - - PREDICTED: ankyrin-1-like [Prunus mume]
20 Hb_012702_010 0.1634979057 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]

Gene co-expression network

sample Hb_116349_050 Hb_116349_050 Hb_000172_300 Hb_000172_300 Hb_116349_050--Hb_000172_300 Hb_174829_040 Hb_174829_040 Hb_116349_050--Hb_174829_040 Hb_000414_100 Hb_000414_100 Hb_116349_050--Hb_000414_100 Hb_002042_190 Hb_002042_190 Hb_116349_050--Hb_002042_190 Hb_048653_040 Hb_048653_040 Hb_116349_050--Hb_048653_040 Hb_000039_100 Hb_000039_100 Hb_116349_050--Hb_000039_100 Hb_000172_300--Hb_000039_100 Hb_000172_300--Hb_048653_040 Hb_011054_030 Hb_011054_030 Hb_000172_300--Hb_011054_030 Hb_000172_300--Hb_174829_040 Hb_012702_010 Hb_012702_010 Hb_000172_300--Hb_012702_010 Hb_000142_010 Hb_000142_010 Hb_174829_040--Hb_000142_010 Hb_174829_040--Hb_002042_190 Hb_002311_490 Hb_002311_490 Hb_174829_040--Hb_002311_490 Hb_174829_040--Hb_000414_100 Hb_033153_010 Hb_033153_010 Hb_000414_100--Hb_033153_010 Hb_011671_290 Hb_011671_290 Hb_000414_100--Hb_011671_290 Hb_001437_200 Hb_001437_200 Hb_000414_100--Hb_001437_200 Hb_002572_060 Hb_002572_060 Hb_000414_100--Hb_002572_060 Hb_002042_190--Hb_000142_010 Hb_002042_190--Hb_000172_300 Hb_052113_020 Hb_052113_020 Hb_002042_190--Hb_052113_020 Hb_000210_150 Hb_000210_150 Hb_002042_190--Hb_000210_150 Hb_048653_040--Hb_000039_100 Hb_048653_040--Hb_011054_030 Hb_048653_040--Hb_001437_200 Hb_055706_010 Hb_055706_010 Hb_048653_040--Hb_055706_010 Hb_000039_100--Hb_011054_030 Hb_001274_040 Hb_001274_040 Hb_000039_100--Hb_001274_040 Hb_000039_100--Hb_001437_200 Hb_005081_060 Hb_005081_060 Hb_000039_100--Hb_005081_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0164736 9.68639 0.26063 1.12799 0.0813899 0.0648165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149597 0.0735714 0.140098 0.596229 0.281149

CAGE analysis