Hb_002311_490

Information

Type -
Description -
Location Contig2311: 257230-257856
Sequence    

Annotation

kegg
ID rcu:RCOM_0682030
description ring finger protein, putative
nr
ID XP_012083978.1
description PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
swissprot
ID Q8L9T5
description RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2
trembl
ID A0A067JV40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18911 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_490 0.0 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
2 Hb_000506_140 0.0865974084 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
3 Hb_000563_460 0.0904604525 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
4 Hb_158123_010 0.094697679 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_174829_040 0.1041833489 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
6 Hb_000465_330 0.1073964605 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
7 Hb_035391_010 0.1081322804 - - TMV resistance protein N, putative [Ricinus communis]
8 Hb_000210_150 0.1132758334 - - PREDICTED: protein YLS9-like [Jatropha curcas]
9 Hb_011805_060 0.1194159702 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_016404_010 0.1196883883 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_027214_060 0.12144099 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
12 Hb_011671_290 0.1246628318 transcription factor TF Family: ERF hypothetical protein JCGZ_26299 [Jatropha curcas]
13 Hb_136027_010 0.1282266779 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_073870_020 0.1288923995 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
15 Hb_000796_200 0.1293750642 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
16 Hb_000142_010 0.1317100904 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
17 Hb_000414_100 0.1317660552 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
18 Hb_009247_020 0.1321093919 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
19 Hb_000610_030 0.1323267687 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
20 Hb_000227_410 0.132344712 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_490 Hb_002311_490 Hb_000506_140 Hb_000506_140 Hb_002311_490--Hb_000506_140 Hb_000563_460 Hb_000563_460 Hb_002311_490--Hb_000563_460 Hb_158123_010 Hb_158123_010 Hb_002311_490--Hb_158123_010 Hb_174829_040 Hb_174829_040 Hb_002311_490--Hb_174829_040 Hb_000465_330 Hb_000465_330 Hb_002311_490--Hb_000465_330 Hb_035391_010 Hb_035391_010 Hb_002311_490--Hb_035391_010 Hb_000796_200 Hb_000796_200 Hb_000506_140--Hb_000796_200 Hb_016404_010 Hb_016404_010 Hb_000506_140--Hb_016404_010 Hb_000506_140--Hb_000465_330 Hb_000506_130 Hb_000506_130 Hb_000506_140--Hb_000506_130 Hb_116349_090 Hb_116349_090 Hb_000506_140--Hb_116349_090 Hb_000016_220 Hb_000016_220 Hb_000563_460--Hb_000016_220 Hb_011671_290 Hb_011671_290 Hb_000563_460--Hb_011671_290 Hb_009247_020 Hb_009247_020 Hb_000563_460--Hb_009247_020 Hb_073870_020 Hb_073870_020 Hb_000563_460--Hb_073870_020 Hb_000563_460--Hb_000506_140 Hb_006483_050 Hb_006483_050 Hb_158123_010--Hb_006483_050 Hb_000210_150 Hb_000210_150 Hb_158123_010--Hb_000210_150 Hb_011287_020 Hb_011287_020 Hb_158123_010--Hb_011287_020 Hb_158123_010--Hb_035391_010 Hb_158123_010--Hb_000465_330 Hb_000142_010 Hb_000142_010 Hb_174829_040--Hb_000142_010 Hb_002042_190 Hb_002042_190 Hb_174829_040--Hb_002042_190 Hb_116349_050 Hb_116349_050 Hb_174829_040--Hb_116349_050 Hb_000172_300 Hb_000172_300 Hb_174829_040--Hb_000172_300 Hb_000414_100 Hb_000414_100 Hb_174829_040--Hb_000414_100 Hb_000465_330--Hb_016404_010 Hb_000465_330--Hb_000796_200 Hb_121913_010 Hb_121913_010 Hb_000465_330--Hb_121913_010 Hb_003582_020 Hb_003582_020 Hb_035391_010--Hb_003582_020 Hb_035391_010--Hb_000210_150 Hb_025477_020 Hb_025477_020 Hb_035391_010--Hb_025477_020 Hb_055706_010 Hb_055706_010 Hb_035391_010--Hb_055706_010 Hb_136027_010 Hb_136027_010 Hb_035391_010--Hb_136027_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.74579 551.801 41.3113 86.8163 3.99267 4.9276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.64988 2.45468 1.83279 8.21562 8.55105

CAGE analysis