Hb_000796_200

Information

Type -
Description -
Location Contig796: 129145-130910
Sequence    

Annotation

kegg
ID pop:POPTR_0002s19350g
description POPTRDRAFT_755676; hypothetical protein
nr
ID XP_012082935.1
description PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
swissprot
ID Q9SYJ2
description Probable glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=GPAT3 PE=2 SV=1
trembl
ID B9GSW2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s19350g PE=4 SV=2
Gene Ontology
ID GO:0016746
description probable glycerol-3-phosphate acyltransferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58564: 129281-129486 , PASA_asmbl_58565: 129521-129766 , PASA_asmbl_58566: 130084-130582
cDNA
(Sanger)
(ID:Location)		 007_P20.ab1: 130086-130470

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_200 0.0 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
2 Hb_000506_140 0.0859032601 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
3 Hb_012423_020 0.1054652192 - - hypothetical protein JCGZ_20730 [Jatropha curcas]
4 Hb_016404_010 0.1187904055 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_011287_020 0.121158003 - - ATP binding protein, putative [Ricinus communis]
6 Hb_116349_090 0.1244498294 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
7 Hb_136027_010 0.1280298538 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
8 Hb_002311_490 0.1293750642 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
9 Hb_000465_330 0.1310879176 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
10 Hb_000529_050 0.1356588725 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
11 Hb_009247_020 0.1364025891 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
12 Hb_000805_150 0.1394854385 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
13 Hb_001477_080 0.1404438573 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
14 Hb_006483_050 0.1415918898 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
15 Hb_000563_460 0.1420739212 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
16 Hb_000506_130 0.1421284754 - - DGCR14-related family protein [Populus trichocarpa]
17 Hb_029238_020 0.142311929 - - PREDICTED: expansin-like A1 [Jatropha curcas]
18 Hb_000322_020 0.1435472055 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
19 Hb_001511_270 0.1438142594 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
20 Hb_001846_040 0.1457224968 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000796_200 Hb_000796_200 Hb_000506_140 Hb_000506_140 Hb_000796_200--Hb_000506_140 Hb_012423_020 Hb_012423_020 Hb_000796_200--Hb_012423_020 Hb_016404_010 Hb_016404_010 Hb_000796_200--Hb_016404_010 Hb_011287_020 Hb_011287_020 Hb_000796_200--Hb_011287_020 Hb_116349_090 Hb_116349_090 Hb_000796_200--Hb_116349_090 Hb_136027_010 Hb_136027_010 Hb_000796_200--Hb_136027_010 Hb_002311_490 Hb_002311_490 Hb_000506_140--Hb_002311_490 Hb_000506_140--Hb_016404_010 Hb_000465_330 Hb_000465_330 Hb_000506_140--Hb_000465_330 Hb_000506_130 Hb_000506_130 Hb_000506_140--Hb_000506_130 Hb_000506_140--Hb_116349_090 Hb_009247_020 Hb_009247_020 Hb_012423_020--Hb_009247_020 Hb_012423_020--Hb_136027_010 Hb_012423_020--Hb_000506_140 Hb_012423_020--Hb_016404_010 Hb_000563_460 Hb_000563_460 Hb_012423_020--Hb_000563_460 Hb_016404_010--Hb_136027_010 Hb_005568_060 Hb_005568_060 Hb_016404_010--Hb_005568_060 Hb_016404_010--Hb_002311_490 Hb_016404_010--Hb_000465_330 Hb_001846_040 Hb_001846_040 Hb_011287_020--Hb_001846_040 Hb_009476_010 Hb_009476_010 Hb_011287_020--Hb_009476_010 Hb_006483_050 Hb_006483_050 Hb_011287_020--Hb_006483_050 Hb_001477_080 Hb_001477_080 Hb_011287_020--Hb_001477_080 Hb_000805_150 Hb_000805_150 Hb_011287_020--Hb_000805_150 Hb_019654_010 Hb_019654_010 Hb_011287_020--Hb_019654_010 Hb_116349_090--Hb_000805_150 Hb_001511_270 Hb_001511_270 Hb_116349_090--Hb_001511_270 Hb_000245_270 Hb_000245_270 Hb_116349_090--Hb_000245_270 Hb_029238_020 Hb_029238_020 Hb_116349_090--Hb_029238_020 Hb_004242_160 Hb_004242_160 Hb_116349_090--Hb_004242_160 Hb_116349_090--Hb_001477_080 Hb_003582_020 Hb_003582_020 Hb_136027_010--Hb_003582_020 Hb_035391_010 Hb_035391_010 Hb_136027_010--Hb_035391_010 Hb_136027_010--Hb_009247_020 Hb_136027_010--Hb_001846_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0992447 9.36769 1.50206 2.33708 0.182358 0.228668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0847145 0.0444334 0.0418743 0.0531474 0.326487

CAGE analysis