Hb_009476_010

Information

Type transcription factor
Description TF Family: C3H
Location Contig9476: 11107-13645
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06940g
description hypothetical protein
nr
ID XP_012087294.1
description PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
swissprot
ID Q9XEE6
description Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1
trembl
ID A0A067LJF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01255 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63276: 10859-13979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_010 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
2 Hb_011287_020 0.0819512778 - - ATP binding protein, putative [Ricinus communis]
3 Hb_032260_100 0.1030783107 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
4 Hb_000805_150 0.1032103569 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
5 Hb_000422_050 0.1053236556 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
6 Hb_029622_080 0.107422438 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
7 Hb_078901_010 0.1110597126 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_000571_030 0.1118179095 - - ammonium transporter, putative [Ricinus communis]
9 Hb_005656_200 0.1196461965 - - Cation transport protein chaC, putative [Ricinus communis]
10 Hb_001477_080 0.1204793392 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
11 Hb_002849_030 0.1212410067 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
12 Hb_000247_150 0.1219700447 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
13 Hb_000322_020 0.1265553653 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
14 Hb_007441_150 0.1266330998 - - Ankyrin repeat family protein [Theobroma cacao]
15 Hb_001511_270 0.1272168518 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
16 Hb_001846_040 0.128488056 - - cytochrome P450, putative [Ricinus communis]
17 Hb_009189_010 0.1307438309 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
18 Hb_000359_080 0.1309705718 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
19 Hb_002234_200 0.1321436535 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
20 Hb_035677_010 0.1353750043 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009476_010 Hb_009476_010 Hb_011287_020 Hb_011287_020 Hb_009476_010--Hb_011287_020 Hb_032260_100 Hb_032260_100 Hb_009476_010--Hb_032260_100 Hb_000805_150 Hb_000805_150 Hb_009476_010--Hb_000805_150 Hb_000422_050 Hb_000422_050 Hb_009476_010--Hb_000422_050 Hb_029622_080 Hb_029622_080 Hb_009476_010--Hb_029622_080 Hb_078901_010 Hb_078901_010 Hb_009476_010--Hb_078901_010 Hb_001846_040 Hb_001846_040 Hb_011287_020--Hb_001846_040 Hb_006483_050 Hb_006483_050 Hb_011287_020--Hb_006483_050 Hb_001477_080 Hb_001477_080 Hb_011287_020--Hb_001477_080 Hb_011287_020--Hb_000805_150 Hb_019654_010 Hb_019654_010 Hb_011287_020--Hb_019654_010 Hb_032260_100--Hb_029622_080 Hb_000656_350 Hb_000656_350 Hb_032260_100--Hb_000656_350 Hb_000529_050 Hb_000529_050 Hb_032260_100--Hb_000529_050 Hb_000808_090 Hb_000808_090 Hb_032260_100--Hb_000808_090 Hb_007441_150 Hb_007441_150 Hb_032260_100--Hb_007441_150 Hb_000571_030 Hb_000571_030 Hb_032260_100--Hb_000571_030 Hb_000245_270 Hb_000245_270 Hb_000805_150--Hb_000245_270 Hb_000805_150--Hb_078901_010 Hb_116349_090 Hb_116349_090 Hb_000805_150--Hb_116349_090 Hb_000805_150--Hb_007441_150 Hb_000322_020 Hb_000322_020 Hb_000422_050--Hb_000322_020 Hb_001257_040 Hb_001257_040 Hb_000422_050--Hb_001257_040 Hb_004586_120 Hb_004586_120 Hb_000422_050--Hb_004586_120 Hb_002849_030 Hb_002849_030 Hb_000422_050--Hb_002849_030 Hb_000127_220 Hb_000127_220 Hb_000422_050--Hb_000127_220 Hb_012496_010 Hb_012496_010 Hb_000422_050--Hb_012496_010 Hb_029622_080--Hb_000808_090 Hb_029622_080--Hb_000656_350 Hb_000221_280 Hb_000221_280 Hb_029622_080--Hb_000221_280 Hb_029622_080--Hb_000571_030 Hb_029622_080--Hb_001257_040 Hb_000434_050 Hb_000434_050 Hb_078901_010--Hb_000434_050 Hb_078901_010--Hb_000245_270 Hb_000172_080 Hb_000172_080 Hb_078901_010--Hb_000172_080 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.491 1688.08 464.157 328.807 5.8934 5.08743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9229 20.8065 17.6039 59.5922 134.109

CAGE analysis