Hb_000373_250

Information

Type -
Description -
Location Contig373: 355456-356628
Sequence    

Annotation

kegg
ID rcu:RCOM_0959160
description hypothetical protein
nr
ID XP_012080748.1
description PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
swissprot
ID A2Z9A6
description UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2
trembl
ID A0A067KG25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15198 PE=4 SV=1
Gene Ontology
ID GO:0003676
description upf0496 protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38150: 355259-356944
cDNA
(Sanger)
(ID:Location)		 009_M20.ab1: 355261-356023 , 037_O12.ab1: 355261-356044 , 051_H12.ab1: 355262-355958

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_250 0.0 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
2 Hb_007120_010 0.0746642997 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
3 Hb_005282_010 0.1019470436 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
4 Hb_002498_250 0.1043873114 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
5 Hb_000988_020 0.1095666586 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
6 Hb_002849_110 0.11055468 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
7 Hb_001405_060 0.1158117017 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
8 Hb_000805_040 0.1164615268 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
9 Hb_000805_150 0.1164885509 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
10 Hb_078901_010 0.1181202021 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
11 Hb_001863_270 0.1220495286 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
12 Hb_002234_200 0.1250975028 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
13 Hb_001989_060 0.1269322675 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
14 Hb_002053_030 0.1274448185 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_094437_050 0.1286050321 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
16 Hb_007441_150 0.1286160354 - - Ankyrin repeat family protein [Theobroma cacao]
17 Hb_002936_030 0.1327775006 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
18 Hb_032920_040 0.1341180566 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
19 Hb_098160_010 0.1380395158 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
20 Hb_000776_050 0.1434901846 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]

Gene co-expression network

sample Hb_000373_250 Hb_000373_250 Hb_007120_010 Hb_007120_010 Hb_000373_250--Hb_007120_010 Hb_005282_010 Hb_005282_010 Hb_000373_250--Hb_005282_010 Hb_002498_250 Hb_002498_250 Hb_000373_250--Hb_002498_250 Hb_000988_020 Hb_000988_020 Hb_000373_250--Hb_000988_020 Hb_002849_110 Hb_002849_110 Hb_000373_250--Hb_002849_110 Hb_001405_060 Hb_001405_060 Hb_000373_250--Hb_001405_060 Hb_001989_060 Hb_001989_060 Hb_007120_010--Hb_001989_060 Hb_000805_040 Hb_000805_040 Hb_007120_010--Hb_000805_040 Hb_001863_270 Hb_001863_270 Hb_007120_010--Hb_001863_270 Hb_000045_140 Hb_000045_140 Hb_007120_010--Hb_000045_140 Hb_007120_010--Hb_002498_250 Hb_005282_010--Hb_001405_060 Hb_002234_200 Hb_002234_200 Hb_005282_010--Hb_002234_200 Hb_003633_150 Hb_003633_150 Hb_005282_010--Hb_003633_150 Hb_005282_010--Hb_002849_110 Hb_098160_010 Hb_098160_010 Hb_005282_010--Hb_098160_010 Hb_094437_050 Hb_094437_050 Hb_002498_250--Hb_094437_050 Hb_005725_280 Hb_005725_280 Hb_002498_250--Hb_005725_280 Hb_004218_080 Hb_004218_080 Hb_002498_250--Hb_004218_080 Hb_011930_120 Hb_011930_120 Hb_002498_250--Hb_011930_120 Hb_007441_150 Hb_007441_150 Hb_000988_020--Hb_007441_150 Hb_032920_040 Hb_032920_040 Hb_000988_020--Hb_032920_040 Hb_000805_150 Hb_000805_150 Hb_000988_020--Hb_000805_150 Hb_078901_010 Hb_078901_010 Hb_000988_020--Hb_078901_010 Hb_000988_020--Hb_005282_010 Hb_000836_210 Hb_000836_210 Hb_002849_110--Hb_000836_210 Hb_002849_110--Hb_001405_060 Hb_000087_100 Hb_000087_100 Hb_002849_110--Hb_000087_100 Hb_004282_040 Hb_004282_040 Hb_002849_110--Hb_004282_040 Hb_001405_060--Hb_002234_200 Hb_001405_060--Hb_098160_010 Hb_001405_060--Hb_003633_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.4619 769.932 301.792 320.296 16.7977 18.3039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5129 18.7592 22.2419 23.0007 100.593

CAGE analysis