Hb_004282_040

Information

Type desease resistance
Description Gene Name: TIR
Location Contig4282: 99334-107988
Sequence    

Annotation

kegg
ID rcu:RCOM_1045320
description TMV resistance protein N, putative
nr
ID XP_012071295.1
description PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID A0A067L5B8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00225 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004282_040 0.0 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
2 Hb_000116_290 0.1214428491 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
3 Hb_002849_110 0.1221898595 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
4 Hb_000742_260 0.1281222922 - - hypothetical protein RCOM_1336320 [Ricinus communis]
5 Hb_009476_160 0.1317467577 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
6 Hb_000976_340 0.1318037563 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_000692_230 0.1328276767 - - phospholipase d delta, putative [Ricinus communis]
8 Hb_004032_250 0.1333461136 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002004_010 0.1373826467 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
10 Hb_064047_010 0.1390326846 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001405_060 0.1403152999 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
12 Hb_004586_230 0.1423373447 - - conserved hypothetical protein [Ricinus communis]
13 Hb_013691_060 0.145546881 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
14 Hb_005282_010 0.1480350578 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
15 Hb_098160_010 0.1496503122 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
16 Hb_000836_210 0.150499643 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
17 Hb_002571_010 0.1507179766 - - cationic amino acid transporter, putative [Ricinus communis]
18 Hb_004143_050 0.1539898828 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
19 Hb_000808_160 0.1549826645 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
20 Hb_000365_190 0.1551874049 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]

Gene co-expression network

sample Hb_004282_040 Hb_004282_040 Hb_000116_290 Hb_000116_290 Hb_004282_040--Hb_000116_290 Hb_002849_110 Hb_002849_110 Hb_004282_040--Hb_002849_110 Hb_000742_260 Hb_000742_260 Hb_004282_040--Hb_000742_260 Hb_009476_160 Hb_009476_160 Hb_004282_040--Hb_009476_160 Hb_000976_340 Hb_000976_340 Hb_004282_040--Hb_000976_340 Hb_000692_230 Hb_000692_230 Hb_004282_040--Hb_000692_230 Hb_000116_290--Hb_000976_340 Hb_000094_010 Hb_000094_010 Hb_000116_290--Hb_000094_010 Hb_000589_330 Hb_000589_330 Hb_000116_290--Hb_000589_330 Hb_050236_010 Hb_050236_010 Hb_000116_290--Hb_050236_010 Hb_001248_170 Hb_001248_170 Hb_000116_290--Hb_001248_170 Hb_000836_210 Hb_000836_210 Hb_002849_110--Hb_000836_210 Hb_001405_060 Hb_001405_060 Hb_002849_110--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002849_110--Hb_005282_010 Hb_000373_250 Hb_000373_250 Hb_002849_110--Hb_000373_250 Hb_000087_100 Hb_000087_100 Hb_002849_110--Hb_000087_100 Hb_013691_060 Hb_013691_060 Hb_000742_260--Hb_013691_060 Hb_000365_190 Hb_000365_190 Hb_000742_260--Hb_000365_190 Hb_004143_050 Hb_004143_050 Hb_000742_260--Hb_004143_050 Hb_004218_290 Hb_004218_290 Hb_000742_260--Hb_004218_290 Hb_113396_010 Hb_113396_010 Hb_000742_260--Hb_113396_010 Hb_011101_010 Hb_011101_010 Hb_000742_260--Hb_011101_010 Hb_000638_180 Hb_000638_180 Hb_009476_160--Hb_000638_180 Hb_009476_160--Hb_000692_230 Hb_004586_230 Hb_004586_230 Hb_009476_160--Hb_004586_230 Hb_002004_010 Hb_002004_010 Hb_009476_160--Hb_002004_010 Hb_001016_040 Hb_001016_040 Hb_009476_160--Hb_001016_040 Hb_000976_340--Hb_001248_170 Hb_000976_340--Hb_000094_010 Hb_005784_020 Hb_005784_020 Hb_000976_340--Hb_005784_020 Hb_008040_060 Hb_008040_060 Hb_000976_340--Hb_008040_060 Hb_002329_030 Hb_002329_030 Hb_000976_340--Hb_002329_030 Hb_000692_230--Hb_000638_180 Hb_002324_040 Hb_002324_040 Hb_000692_230--Hb_002324_040 Hb_103149_010 Hb_103149_010 Hb_000692_230--Hb_103149_010 Hb_002973_030 Hb_002973_030 Hb_000692_230--Hb_002973_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00744076 1.1162 0.228662 0.743226 0.035789 0.0260122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0168839 0.0132859 0.0253494 0.184601 0.226136

CAGE analysis