Hb_050236_010

Information

Type -
Description -
Location Contig50236: 305-990
Sequence    

Annotation

kegg
ID egr:104446720
description uncharacterized LOC104446720
nr
ID KCW74301.1
description hypothetical protein EUGRSUZ_E02960, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059C7X6
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E02960 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein EUGRSUZ_E02960, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050236_010 0.0 - - hypothetical protein EUGRSUZ_E02960, partial [Eucalyptus grandis]
2 Hb_003656_170 0.1130642952 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
3 Hb_000116_290 0.1181471864 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
4 Hb_004306_140 0.1305905487 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_002324_050 0.1337922121 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
6 Hb_000976_340 0.1346441118 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_001123_170 0.1373239872 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012098_180 0.1375563188 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
9 Hb_007894_030 0.1431156983 - - calcium-dependent protein kinase, putative [Ricinus communis]
10 Hb_000094_010 0.1459707945 - - lrr receptor protein kinase, putative [Ricinus communis]
11 Hb_000977_090 0.1482248656 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
12 Hb_001248_170 0.1496268367 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
13 Hb_000589_330 0.1501378528 - - kinase, putative [Ricinus communis]
14 Hb_002431_090 0.1507196987 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004166_020 0.1531577416 - - -
16 Hb_000391_060 0.1535130581 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
17 Hb_006052_060 0.153718485 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
18 Hb_014361_020 0.1542864533 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
19 Hb_000009_300 0.1569895354 - - hypothetical protein CICLE_v10024731mg [Citrus clementina]
20 Hb_002600_010 0.1573405503 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_050236_010 Hb_050236_010 Hb_003656_170 Hb_003656_170 Hb_050236_010--Hb_003656_170 Hb_000116_290 Hb_000116_290 Hb_050236_010--Hb_000116_290 Hb_004306_140 Hb_004306_140 Hb_050236_010--Hb_004306_140 Hb_002324_050 Hb_002324_050 Hb_050236_010--Hb_002324_050 Hb_000976_340 Hb_000976_340 Hb_050236_010--Hb_000976_340 Hb_001123_170 Hb_001123_170 Hb_050236_010--Hb_001123_170 Hb_003656_170--Hb_001123_170 Hb_003656_170--Hb_002324_050 Hb_002078_250 Hb_002078_250 Hb_003656_170--Hb_002078_250 Hb_003964_010 Hb_003964_010 Hb_003656_170--Hb_003964_010 Hb_003656_170--Hb_004306_140 Hb_000116_290--Hb_000976_340 Hb_000094_010 Hb_000094_010 Hb_000116_290--Hb_000094_010 Hb_000589_330 Hb_000589_330 Hb_000116_290--Hb_000589_330 Hb_001248_170 Hb_001248_170 Hb_000116_290--Hb_001248_170 Hb_004282_040 Hb_004282_040 Hb_000116_290--Hb_004282_040 Hb_114310_050 Hb_114310_050 Hb_004306_140--Hb_114310_050 Hb_007894_030 Hb_007894_030 Hb_004306_140--Hb_007894_030 Hb_000589_240 Hb_000589_240 Hb_004306_140--Hb_000589_240 Hb_000614_190 Hb_000614_190 Hb_004306_140--Hb_000614_190 Hb_000477_110 Hb_000477_110 Hb_004306_140--Hb_000477_110 Hb_014361_020 Hb_014361_020 Hb_004306_140--Hb_014361_020 Hb_002324_040 Hb_002324_040 Hb_002324_050--Hb_002324_040 Hb_004032_250 Hb_004032_250 Hb_002324_050--Hb_004032_250 Hb_002324_050--Hb_003964_010 Hb_003025_150 Hb_003025_150 Hb_002324_050--Hb_003025_150 Hb_002324_050--Hb_001123_170 Hb_000976_340--Hb_001248_170 Hb_000976_340--Hb_000094_010 Hb_005784_020 Hb_005784_020 Hb_000976_340--Hb_005784_020 Hb_008040_060 Hb_008040_060 Hb_000976_340--Hb_008040_060 Hb_002329_030 Hb_002329_030 Hb_000976_340--Hb_002329_030 Hb_001377_130 Hb_001377_130 Hb_001123_170--Hb_001377_130 Hb_004544_090 Hb_004544_090 Hb_001123_170--Hb_004544_090 Hb_000382_030 Hb_000382_030 Hb_001123_170--Hb_000382_030 Hb_001123_170--Hb_000477_110 Hb_001123_170--Hb_002078_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0601052 19.2492 7.17638 12.1903 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.659831 0.0864181 1.19856 7.64702 5.13518

CAGE analysis