Hb_003964_010

Information

Type transcription factor
Description TF Family: WRKY
Location Contig3964: 16085-21886
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09360g
description POPTRDRAFT_656500; hypothetical protein
nr
ID XP_002311329.2
description hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
swissprot
ID Q9C983
description Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1
trembl
ID B9HID0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s09360g PE=4 SV=2
Gene Ontology
ID GO:0003677
description probable wrky transcription factor 57

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39565: 16738-21554 , PASA_asmbl_39566: 16738-21594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003964_010 0.0 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
2 Hb_002078_250 0.0998427642 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003656_170 0.1016373961 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
4 Hb_002324_050 0.1045629657 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
5 Hb_005649_010 0.1117554009 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
6 Hb_064985_010 0.1142279868 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
7 Hb_002343_020 0.1210162442 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
8 Hb_001123_170 0.1239224916 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006934_020 0.1309026503 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
10 Hb_006634_090 0.1314469866 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
11 Hb_001776_100 0.1319158909 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
12 Hb_002078_240 0.132075832 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
13 Hb_013938_010 0.1328283757 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
14 Hb_023386_050 0.1345793369 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001377_130 0.1362199495 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
16 Hb_000069_430 0.1363215114 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
17 Hb_004032_090 0.1367970413 - - PREDICTED: protein AIG1 [Jatropha curcas]
18 Hb_000382_030 0.1374581906 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
19 Hb_001195_230 0.1380102987 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
20 Hb_000477_110 0.1383963892 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003964_010 Hb_003964_010 Hb_002078_250 Hb_002078_250 Hb_003964_010--Hb_002078_250 Hb_003656_170 Hb_003656_170 Hb_003964_010--Hb_003656_170 Hb_002324_050 Hb_002324_050 Hb_003964_010--Hb_002324_050 Hb_005649_010 Hb_005649_010 Hb_003964_010--Hb_005649_010 Hb_064985_010 Hb_064985_010 Hb_003964_010--Hb_064985_010 Hb_002343_020 Hb_002343_020 Hb_003964_010--Hb_002343_020 Hb_000411_050 Hb_000411_050 Hb_002078_250--Hb_000411_050 Hb_002078_250--Hb_003656_170 Hb_001123_170 Hb_001123_170 Hb_002078_250--Hb_001123_170 Hb_004544_090 Hb_004544_090 Hb_002078_250--Hb_004544_090 Hb_003025_150 Hb_003025_150 Hb_002078_250--Hb_003025_150 Hb_003656_170--Hb_001123_170 Hb_003656_170--Hb_002324_050 Hb_004306_140 Hb_004306_140 Hb_003656_170--Hb_004306_140 Hb_050236_010 Hb_050236_010 Hb_003656_170--Hb_050236_010 Hb_002324_040 Hb_002324_040 Hb_002324_050--Hb_002324_040 Hb_004032_250 Hb_004032_250 Hb_002324_050--Hb_004032_250 Hb_002324_050--Hb_003025_150 Hb_002324_050--Hb_001123_170 Hb_005649_010--Hb_002343_020 Hb_005649_010--Hb_064985_010 Hb_001377_130 Hb_001377_130 Hb_005649_010--Hb_001377_130 Hb_013938_010 Hb_013938_010 Hb_005649_010--Hb_013938_010 Hb_001318_110 Hb_001318_110 Hb_005649_010--Hb_001318_110 Hb_001008_110 Hb_001008_110 Hb_064985_010--Hb_001008_110 Hb_007894_030 Hb_007894_030 Hb_064985_010--Hb_007894_030 Hb_006634_090 Hb_006634_090 Hb_064985_010--Hb_006634_090 Hb_001636_010 Hb_001636_010 Hb_064985_010--Hb_001636_010 Hb_000527_140 Hb_000527_140 Hb_064985_010--Hb_000527_140 Hb_000402_030 Hb_000402_030 Hb_002343_020--Hb_000402_030 Hb_025236_020 Hb_025236_020 Hb_002343_020--Hb_025236_020 Hb_004032_090 Hb_004032_090 Hb_002343_020--Hb_004032_090 Hb_002343_020--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_002343_020--Hb_005375_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.526191 8.92515 6.46416 6.58136 0.554881 0.0341688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.312136 0.156276 0.210362 6.30233 3.65516

CAGE analysis