Hb_001318_110

Information

Type -
Description -
Location Contig1318: 107516-109606
Sequence    

Annotation

kegg
ID rcu:RCOM_1344240
description hypothetical protein
nr
ID XP_012082970.1
description PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
swissprot
ID A8LHQ6
description Protein TolB OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) GN=tolB PE=3 SV=1
trembl
ID A0A067JZW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14089 PE=4 SV=1
Gene Ontology
ID GO:0016020
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_110 0.0 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
2 Hb_005649_010 0.1308053885 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
3 Hb_002641_050 0.1372406527 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
4 Hb_013938_010 0.1391318779 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
5 Hb_001832_240 0.1461256083 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
6 Hb_005628_050 0.1469582324 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
7 Hb_000031_160 0.1510361544 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
8 Hb_000347_020 0.1517682881 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
9 Hb_002030_180 0.1555946395 - - ring finger protein, putative [Ricinus communis]
10 Hb_008080_030 0.1601785274 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
11 Hb_001141_210 0.160711639 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
12 Hb_184008_010 0.1633887185 - - putative LRR receptor-like serine/threonine-protein kinase [Morus notabilis]
13 Hb_043987_010 0.1689112216 - - glutathione s-transferase, putative [Ricinus communis]
14 Hb_000051_030 0.1699038212 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
15 Hb_000001_010 0.1704900055 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
16 Hb_001454_290 0.1724064101 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
17 Hb_002343_020 0.1733085054 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
18 Hb_005814_010 0.1735478288 - - ATP binding protein, putative [Ricinus communis]
19 Hb_042083_060 0.1742900408 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
20 Hb_002477_100 0.1764850738 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_110 Hb_001318_110 Hb_005649_010 Hb_005649_010 Hb_001318_110--Hb_005649_010 Hb_002641_050 Hb_002641_050 Hb_001318_110--Hb_002641_050 Hb_013938_010 Hb_013938_010 Hb_001318_110--Hb_013938_010 Hb_001832_240 Hb_001832_240 Hb_001318_110--Hb_001832_240 Hb_005628_050 Hb_005628_050 Hb_001318_110--Hb_005628_050 Hb_000031_160 Hb_000031_160 Hb_001318_110--Hb_000031_160 Hb_002343_020 Hb_002343_020 Hb_005649_010--Hb_002343_020 Hb_003964_010 Hb_003964_010 Hb_005649_010--Hb_003964_010 Hb_064985_010 Hb_064985_010 Hb_005649_010--Hb_064985_010 Hb_001377_130 Hb_001377_130 Hb_005649_010--Hb_001377_130 Hb_005649_010--Hb_013938_010 Hb_004667_040 Hb_004667_040 Hb_002641_050--Hb_004667_040 Hb_025236_020 Hb_025236_020 Hb_002641_050--Hb_025236_020 Hb_002641_050--Hb_013938_010 Hb_002641_050--Hb_002343_020 Hb_184008_010 Hb_184008_010 Hb_002641_050--Hb_184008_010 Hb_013938_010--Hb_184008_010 Hb_013938_010--Hb_003964_010 Hb_013938_010--Hb_002343_020 Hb_043987_010 Hb_043987_010 Hb_013938_010--Hb_043987_010 Hb_008080_030 Hb_008080_030 Hb_001832_240--Hb_008080_030 Hb_001832_240--Hb_005628_050 Hb_002871_050 Hb_002871_050 Hb_001832_240--Hb_002871_050 Hb_000046_590 Hb_000046_590 Hb_001832_240--Hb_000046_590 Hb_001454_290 Hb_001454_290 Hb_001832_240--Hb_001454_290 Hb_003881_020 Hb_003881_020 Hb_001832_240--Hb_003881_020 Hb_005628_050--Hb_000031_160 Hb_000382_030 Hb_000382_030 Hb_005628_050--Hb_000382_030 Hb_005628_050--Hb_001377_130 Hb_000598_020 Hb_000598_020 Hb_005628_050--Hb_000598_020 Hb_000417_120 Hb_000417_120 Hb_005628_050--Hb_000417_120 Hb_001619_020 Hb_001619_020 Hb_000031_160--Hb_001619_020 Hb_001141_210 Hb_001141_210 Hb_000031_160--Hb_001141_210 Hb_005814_010 Hb_005814_010 Hb_000031_160--Hb_005814_010 Hb_004785_160 Hb_004785_160 Hb_000031_160--Hb_004785_160 Hb_001635_230 Hb_001635_230 Hb_000031_160--Hb_001635_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.61009 100.793 126.824 62.6562 2.41297 3.18985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.57808 4.36136 3.081 83.1516 8.69235

CAGE analysis