Hb_043987_010

Information

Type -
Description -
Location Contig43987: 693-1699
Sequence    

Annotation

kegg
ID rcu:RCOM_0527790
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_002525352.1
description glutathione s-transferase, putative [Ricinus communis]
swissprot
ID Q9FQA3
description Glutathione transferase GST 23 OS=Zea mays PE=2 SV=1
trembl
ID B9SH83
description Glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_0527790 PE=3 SV=1
Gene Ontology
ID GO:0004462
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42604: 812-1896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043987_010 0.0 - - glutathione s-transferase, putative [Ricinus communis]
2 Hb_002030_180 0.115306364 - - ring finger protein, putative [Ricinus communis]
3 Hb_002477_100 0.1185038782 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
4 Hb_001377_130 0.124446799 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
5 Hb_005542_030 0.1353802686 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]
6 Hb_005628_050 0.138497539 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
7 Hb_005649_010 0.1385342671 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
8 Hb_000382_030 0.146610279 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
9 Hb_013938_010 0.1473196004 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
10 Hb_005463_070 0.1541510038 - - calcium ion binding protein, putative [Ricinus communis]
11 Hb_000318_050 0.1545364095 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
12 Hb_000009_150 0.1552989183 - - carbohydrate transporter, putative [Ricinus communis]
13 Hb_000031_160 0.1571261941 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
14 Hb_083412_010 0.1578973608 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
15 Hb_000152_170 0.1589752339 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
16 Hb_000002_350 0.1594087886 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
17 Hb_001619_020 0.1595241217 - - LRR receptor-like kinase family protein [Medicago truncatula]
18 Hb_001433_160 0.1625965347 - - phosphatase 2C family protein [Populus trichocarpa]
19 Hb_002361_010 0.1651411361 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
20 Hb_000946_050 0.1660520333 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_043987_010 Hb_043987_010 Hb_002030_180 Hb_002030_180 Hb_043987_010--Hb_002030_180 Hb_002477_100 Hb_002477_100 Hb_043987_010--Hb_002477_100 Hb_001377_130 Hb_001377_130 Hb_043987_010--Hb_001377_130 Hb_005542_030 Hb_005542_030 Hb_043987_010--Hb_005542_030 Hb_005628_050 Hb_005628_050 Hb_043987_010--Hb_005628_050 Hb_005649_010 Hb_005649_010 Hb_043987_010--Hb_005649_010 Hb_005814_010 Hb_005814_010 Hb_002030_180--Hb_005814_010 Hb_000495_050 Hb_000495_050 Hb_002030_180--Hb_000495_050 Hb_000031_160 Hb_000031_160 Hb_002030_180--Hb_000031_160 Hb_002030_180--Hb_002477_100 Hb_000009_150 Hb_000009_150 Hb_002030_180--Hb_000009_150 Hb_023278_030 Hb_023278_030 Hb_002477_100--Hb_023278_030 Hb_002597_020 Hb_002597_020 Hb_002477_100--Hb_002597_020 Hb_000020_070 Hb_000020_070 Hb_002477_100--Hb_000020_070 Hb_001318_110 Hb_001318_110 Hb_002477_100--Hb_001318_110 Hb_000382_030 Hb_000382_030 Hb_001377_130--Hb_000382_030 Hb_001123_170 Hb_001123_170 Hb_001377_130--Hb_001123_170 Hb_000237_070 Hb_000237_070 Hb_001377_130--Hb_000237_070 Hb_000318_050 Hb_000318_050 Hb_001377_130--Hb_000318_050 Hb_001377_130--Hb_005628_050 Hb_001538_050 Hb_001538_050 Hb_001377_130--Hb_001538_050 Hb_006528_020 Hb_006528_020 Hb_005542_030--Hb_006528_020 Hb_000163_180 Hb_000163_180 Hb_005542_030--Hb_000163_180 Hb_000152_170 Hb_000152_170 Hb_005542_030--Hb_000152_170 Hb_002361_010 Hb_002361_010 Hb_005542_030--Hb_002361_010 Hb_000482_070 Hb_000482_070 Hb_005542_030--Hb_000482_070 Hb_005628_050--Hb_000031_160 Hb_001832_240 Hb_001832_240 Hb_005628_050--Hb_001832_240 Hb_005628_050--Hb_000382_030 Hb_000598_020 Hb_000598_020 Hb_005628_050--Hb_000598_020 Hb_000417_120 Hb_000417_120 Hb_005628_050--Hb_000417_120 Hb_002343_020 Hb_002343_020 Hb_005649_010--Hb_002343_020 Hb_003964_010 Hb_003964_010 Hb_005649_010--Hb_003964_010 Hb_064985_010 Hb_064985_010 Hb_005649_010--Hb_064985_010 Hb_005649_010--Hb_001377_130 Hb_013938_010 Hb_013938_010 Hb_005649_010--Hb_013938_010 Hb_005649_010--Hb_001318_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 15.1626 17.4073 10.8002 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.235563 0.879923 1.09874 11.9198 4.69327

CAGE analysis