Hb_005542_030

Information

Type transcription factor
Description TF Family: WRKY
Location Contig5542: 39763-41238
Sequence    

Annotation

kegg
ID rcu:RCOM_0689800
description WRKY transcription factor, putative
nr
ID XP_012091128.1
description PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]
swissprot
ID Q9LY00
description Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1
trembl
ID S5CFW3
description WRKY transcription factor 57.1 OS=Jatropha curcas GN=WRKY57 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable wrky transcription factor 70

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48427: 39774-41209
cDNA
(Sanger)
(ID:Location)		 043_F05.ab1: 39774-40843

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_030 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]
2 Hb_006528_020 0.1201540737 - - conserved hypothetical protein [Ricinus communis]
3 Hb_043987_010 0.1353802686 - - glutathione s-transferase, putative [Ricinus communis]
4 Hb_000163_180 0.1359621736 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
5 Hb_000152_170 0.1381746145 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
6 Hb_002361_010 0.1396924008 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
7 Hb_000482_070 0.1405388268 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
8 Hb_000002_350 0.1414302125 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
9 Hb_002010_100 0.144435134 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
10 Hb_000018_090 0.1448091697 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001776_100 0.1457195291 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
12 Hb_000365_180 0.1477306386 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
13 Hb_001776_130 0.1479256592 - - metallothionein [Hevea brasiliensis]
14 Hb_009476_070 0.1480901476 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
15 Hb_000731_210 0.1490273968 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002301_370 0.1507182656 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
17 Hb_000009_150 0.1518245453 - - carbohydrate transporter, putative [Ricinus communis]
18 Hb_002316_020 0.153572244 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
19 Hb_002503_050 0.154986521 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
20 Hb_001019_160 0.1564883764 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005542_030 Hb_005542_030 Hb_006528_020 Hb_006528_020 Hb_005542_030--Hb_006528_020 Hb_043987_010 Hb_043987_010 Hb_005542_030--Hb_043987_010 Hb_000163_180 Hb_000163_180 Hb_005542_030--Hb_000163_180 Hb_000152_170 Hb_000152_170 Hb_005542_030--Hb_000152_170 Hb_002361_010 Hb_002361_010 Hb_005542_030--Hb_002361_010 Hb_000482_070 Hb_000482_070 Hb_005542_030--Hb_000482_070 Hb_001776_100 Hb_001776_100 Hb_006528_020--Hb_001776_100 Hb_000731_210 Hb_000731_210 Hb_006528_020--Hb_000731_210 Hb_002301_370 Hb_002301_370 Hb_006528_020--Hb_002301_370 Hb_004678_030 Hb_004678_030 Hb_006528_020--Hb_004678_030 Hb_000318_170 Hb_000318_170 Hb_006528_020--Hb_000318_170 Hb_002030_180 Hb_002030_180 Hb_043987_010--Hb_002030_180 Hb_002477_100 Hb_002477_100 Hb_043987_010--Hb_002477_100 Hb_001377_130 Hb_001377_130 Hb_043987_010--Hb_001377_130 Hb_005628_050 Hb_005628_050 Hb_043987_010--Hb_005628_050 Hb_005649_010 Hb_005649_010 Hb_043987_010--Hb_005649_010 Hb_000365_180 Hb_000365_180 Hb_000163_180--Hb_000365_180 Hb_142026_010 Hb_142026_010 Hb_000163_180--Hb_142026_010 Hb_008749_010 Hb_008749_010 Hb_000163_180--Hb_008749_010 Hb_030982_050 Hb_030982_050 Hb_000163_180--Hb_030982_050 Hb_003092_020 Hb_003092_020 Hb_000163_180--Hb_003092_020 Hb_106089_010 Hb_106089_010 Hb_000163_180--Hb_106089_010 Hb_138086_010 Hb_138086_010 Hb_000152_170--Hb_138086_010 Hb_000152_170--Hb_000365_180 Hb_000563_630 Hb_000563_630 Hb_000152_170--Hb_000563_630 Hb_000152_170--Hb_000163_180 Hb_028841_010 Hb_028841_010 Hb_000152_170--Hb_028841_010 Hb_008406_070 Hb_008406_070 Hb_000152_170--Hb_008406_070 Hb_002010_100 Hb_002010_100 Hb_002361_010--Hb_002010_100 Hb_005016_080 Hb_005016_080 Hb_002361_010--Hb_005016_080 Hb_007483_080 Hb_007483_080 Hb_002361_010--Hb_007483_080 Hb_005463_070 Hb_005463_070 Hb_002361_010--Hb_005463_070 Hb_000318_050 Hb_000318_050 Hb_002361_010--Hb_000318_050 Hb_018212_010 Hb_018212_010 Hb_002361_010--Hb_018212_010 Hb_000018_090 Hb_000018_090 Hb_000482_070--Hb_000018_090 Hb_002871_050 Hb_002871_050 Hb_000482_070--Hb_002871_050 Hb_007747_160 Hb_007747_160 Hb_000482_070--Hb_007747_160 Hb_003881_020 Hb_003881_020 Hb_000482_070--Hb_003881_020 Hb_000567_060 Hb_000567_060 Hb_000482_070--Hb_000567_060 Hb_005679_110 Hb_005679_110 Hb_000482_070--Hb_005679_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0681347 8.77262 14.8326 9.96815 0.0730387 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.998582 0.294558 0.182453 7.04328 4.32979

CAGE analysis