Hb_138086_010

Information

Type -
Description -
Location Contig138086: 961-2256
Sequence    

Annotation

kegg
ID rcu:RCOM_0495210
description Auxin-induced in root cultures protein 12 precursor, putative
nr
ID XP_002532004.1
description Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
swissprot
ID Q9FGK4
description Cytochrome b561 and DOMON domain-containing protein At5g47530 OS=Arabidopsis thaliana GN=At5g47530 PE=2 SV=1
trembl
ID B9T181
description Auxin-induced in root cultures protein 12, putative OS=Ricinus communis GN=RCOM_0495210 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cytochrome b561 and domon domain-containing protein at5g47530-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10505: 1092-1417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138086_010 0.0 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
2 Hb_008406_070 0.087967389 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
3 Hb_001198_160 0.0910364052 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
4 Hb_009476_070 0.0944448382 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
5 Hb_000152_170 0.1015629882 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
6 Hb_070634_010 0.1040784936 - - TMV resistance protein N, putative [Ricinus communis]
7 Hb_000365_180 0.1048964783 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
8 Hb_001610_070 0.1068155425 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
9 Hb_008806_040 0.1069939727 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
10 Hb_011915_020 0.1084990951 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
11 Hb_177215_020 0.1106800448 - - acc synthase, putative [Ricinus communis]
12 Hb_001141_210 0.1157000794 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
13 Hb_000071_090 0.1173115147 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
14 Hb_000054_140 0.1191816322 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
15 Hb_002374_030 0.1205059704 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
16 Hb_004116_150 0.1206660786 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001247_160 0.1226750991 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
18 Hb_008749_010 0.1233811556 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
19 Hb_023386_060 0.1283609236 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
20 Hb_000836_220 0.1287041126 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_138086_010 Hb_138086_010 Hb_008406_070 Hb_008406_070 Hb_138086_010--Hb_008406_070 Hb_001198_160 Hb_001198_160 Hb_138086_010--Hb_001198_160 Hb_009476_070 Hb_009476_070 Hb_138086_010--Hb_009476_070 Hb_000152_170 Hb_000152_170 Hb_138086_010--Hb_000152_170 Hb_070634_010 Hb_070634_010 Hb_138086_010--Hb_070634_010 Hb_000365_180 Hb_000365_180 Hb_138086_010--Hb_000365_180 Hb_002374_030 Hb_002374_030 Hb_008406_070--Hb_002374_030 Hb_000071_090 Hb_000071_090 Hb_008406_070--Hb_000071_090 Hb_000878_090 Hb_000878_090 Hb_008406_070--Hb_000878_090 Hb_011915_020 Hb_011915_020 Hb_008406_070--Hb_011915_020 Hb_001160_050 Hb_001160_050 Hb_008406_070--Hb_001160_050 Hb_000028_330 Hb_000028_330 Hb_001198_160--Hb_000028_330 Hb_001610_070 Hb_001610_070 Hb_001198_160--Hb_001610_070 Hb_000836_220 Hb_000836_220 Hb_001198_160--Hb_000836_220 Hb_177215_020 Hb_177215_020 Hb_001198_160--Hb_177215_020 Hb_000054_140 Hb_000054_140 Hb_001198_160--Hb_000054_140 Hb_009476_070--Hb_000365_180 Hb_008806_040 Hb_008806_040 Hb_009476_070--Hb_008806_040 Hb_008749_010 Hb_008749_010 Hb_009476_070--Hb_008749_010 Hb_002774_180 Hb_002774_180 Hb_009476_070--Hb_002774_180 Hb_005463_070 Hb_005463_070 Hb_009476_070--Hb_005463_070 Hb_000152_170--Hb_000365_180 Hb_000563_630 Hb_000563_630 Hb_000152_170--Hb_000563_630 Hb_000163_180 Hb_000163_180 Hb_000152_170--Hb_000163_180 Hb_028841_010 Hb_028841_010 Hb_000152_170--Hb_028841_010 Hb_000152_170--Hb_008406_070 Hb_070634_010--Hb_008806_040 Hb_160653_010 Hb_160653_010 Hb_070634_010--Hb_160653_010 Hb_002676_110 Hb_002676_110 Hb_070634_010--Hb_002676_110 Hb_001430_010 Hb_001430_010 Hb_070634_010--Hb_001430_010 Hb_010721_010 Hb_010721_010 Hb_070634_010--Hb_010721_010 Hb_000365_180--Hb_000163_180 Hb_001989_070 Hb_001989_070 Hb_000365_180--Hb_001989_070 Hb_000365_180--Hb_008749_010 Hb_002010_100 Hb_002010_100 Hb_000365_180--Hb_002010_100 Hb_033187_020 Hb_033187_020 Hb_000365_180--Hb_033187_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0222115 10.1397 10.9803 9.0533 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0406922 0.0960271 0.0595378 2.80825 2.38446

CAGE analysis