Hb_000071_090

Information

Type -
Description -
Location Contig71: 88205-91565
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24620g
description POPTRDRAFT_797687; hypothetical protein
nr
ID XP_012065028.1
description PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
swissprot
ID Q9LQN6
description Probable protein phosphatase 2C 4 OS=Arabidopsis thaliana GN=PLL5 PE=2 SV=1
trembl
ID A0A067L726
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05698 PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55182: 88224-90863 , PASA_asmbl_55183: 88937-89261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000071_090 0.0 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
2 Hb_008406_070 0.0830435072 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
3 Hb_003078_070 0.088732715 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
4 Hb_002374_030 0.0907203651 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
5 Hb_001769_120 0.0988495506 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
6 Hb_189208_060 0.1013043998 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
7 Hb_000985_140 0.1015310992 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
8 Hb_000454_080 0.1022769049 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
9 Hb_000836_420 0.105362289 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_010812_060 0.1065296705 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
11 Hb_000032_090 0.1083778416 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001254_020 0.1109959011 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
13 Hb_000152_410 0.1150350883 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
14 Hb_001247_160 0.1170338491 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
15 Hb_138086_010 0.1173115147 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
16 Hb_001160_050 0.120789349 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
17 Hb_007904_290 0.122780796 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
18 Hb_000878_090 0.1253040324 - - sucrose-phosphatase family protein [Populus trichocarpa]
19 Hb_004837_200 0.1260808867 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
20 Hb_000152_170 0.1283119181 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000071_090 Hb_000071_090 Hb_008406_070 Hb_008406_070 Hb_000071_090--Hb_008406_070 Hb_003078_070 Hb_003078_070 Hb_000071_090--Hb_003078_070 Hb_002374_030 Hb_002374_030 Hb_000071_090--Hb_002374_030 Hb_001769_120 Hb_001769_120 Hb_000071_090--Hb_001769_120 Hb_189208_060 Hb_189208_060 Hb_000071_090--Hb_189208_060 Hb_000985_140 Hb_000985_140 Hb_000071_090--Hb_000985_140 Hb_008406_070--Hb_002374_030 Hb_138086_010 Hb_138086_010 Hb_008406_070--Hb_138086_010 Hb_000878_090 Hb_000878_090 Hb_008406_070--Hb_000878_090 Hb_011915_020 Hb_011915_020 Hb_008406_070--Hb_011915_020 Hb_001160_050 Hb_001160_050 Hb_008406_070--Hb_001160_050 Hb_003078_070--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_003078_070--Hb_021254_020 Hb_000172_410 Hb_000172_410 Hb_003078_070--Hb_000172_410 Hb_004837_200 Hb_004837_200 Hb_003078_070--Hb_004837_200 Hb_000836_420 Hb_000836_420 Hb_003078_070--Hb_000836_420 Hb_002374_030--Hb_001160_050 Hb_002374_030--Hb_189208_060 Hb_000032_090 Hb_000032_090 Hb_002374_030--Hb_000032_090 Hb_002374_030--Hb_000836_420 Hb_000152_410 Hb_000152_410 Hb_001769_120--Hb_000152_410 Hb_009907_020 Hb_009907_020 Hb_001769_120--Hb_009907_020 Hb_028487_040 Hb_028487_040 Hb_001769_120--Hb_028487_040 Hb_001769_120--Hb_001160_050 Hb_001769_120--Hb_000836_420 Hb_189208_060--Hb_001160_050 Hb_189208_060--Hb_000836_420 Hb_011794_050 Hb_011794_050 Hb_189208_060--Hb_011794_050 Hb_001660_080 Hb_001660_080 Hb_189208_060--Hb_001660_080 Hb_189208_060--Hb_000152_410 Hb_004393_030 Hb_004393_030 Hb_000985_140--Hb_004393_030 Hb_000985_140--Hb_021254_020 Hb_001247_160 Hb_001247_160 Hb_000985_140--Hb_001247_160 Hb_000985_140--Hb_000032_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.272537 14.426 18.8243 10.8809 0.112024 0.128565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149323 0.249684 0.363601 2.32216 4.89569

CAGE analysis