Hb_001769_120

Information

Type -
Description -
Location Contig1769: 89228-93948
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01630g
description POPTRDRAFT_572035; NO POLLEN GERMINATION RELATED 1 family protein
nr
ID XP_012068218.1
description PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
swissprot
ID Q86TV6
description Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3
trembl
ID A0A067L318
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16025 PE=4 SV=1
Gene Ontology
ID GO:0005886
description tetratricopeptide repeat protein 7b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16986: 88887-92065 , PASA_asmbl_16987: 92078-93675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001769_120 0.0 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
2 Hb_000152_410 0.0975803229 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
3 Hb_000071_090 0.0988495506 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
4 Hb_009907_020 0.1071578755 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
5 Hb_028487_040 0.1123023847 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
6 Hb_001160_050 0.1179074311 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
7 Hb_000836_420 0.1180035923 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_000878_090 0.1211045064 - - sucrose-phosphatase family protein [Populus trichocarpa]
9 Hb_189208_060 0.121926125 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
10 Hb_004837_200 0.1233438674 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
11 Hb_000771_040 0.1247417071 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
12 Hb_000454_080 0.1280330953 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
13 Hb_003688_220 0.1280590756 - - unknown [Populus trichocarpa]
14 Hb_008749_010 0.13436202 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
15 Hb_002374_030 0.1349997337 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
16 Hb_001776_130 0.1355455733 - - metallothionein [Hevea brasiliensis]
17 Hb_005463_070 0.1383841185 - - calcium ion binding protein, putative [Ricinus communis]
18 Hb_008406_070 0.1394851613 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
19 Hb_000495_050 0.1411427434 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
20 Hb_001989_070 0.1421629357 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]

Gene co-expression network

sample Hb_001769_120 Hb_001769_120 Hb_000152_410 Hb_000152_410 Hb_001769_120--Hb_000152_410 Hb_000071_090 Hb_000071_090 Hb_001769_120--Hb_000071_090 Hb_009907_020 Hb_009907_020 Hb_001769_120--Hb_009907_020 Hb_028487_040 Hb_028487_040 Hb_001769_120--Hb_028487_040 Hb_001160_050 Hb_001160_050 Hb_001769_120--Hb_001160_050 Hb_000836_420 Hb_000836_420 Hb_001769_120--Hb_000836_420 Hb_003029_010 Hb_003029_010 Hb_000152_410--Hb_003029_010 Hb_002596_090 Hb_002596_090 Hb_000152_410--Hb_002596_090 Hb_000878_090 Hb_000878_090 Hb_000152_410--Hb_000878_090 Hb_000152_410--Hb_000836_420 Hb_000152_410--Hb_028487_040 Hb_008406_070 Hb_008406_070 Hb_000071_090--Hb_008406_070 Hb_003078_070 Hb_003078_070 Hb_000071_090--Hb_003078_070 Hb_002374_030 Hb_002374_030 Hb_000071_090--Hb_002374_030 Hb_189208_060 Hb_189208_060 Hb_000071_090--Hb_189208_060 Hb_000985_140 Hb_000985_140 Hb_000071_090--Hb_000985_140 Hb_009907_020--Hb_000878_090 Hb_009907_020--Hb_001160_050 Hb_002311_500 Hb_002311_500 Hb_009907_020--Hb_002311_500 Hb_000771_040 Hb_000771_040 Hb_009907_020--Hb_000771_040 Hb_008749_010 Hb_008749_010 Hb_009907_020--Hb_008749_010 Hb_028487_040--Hb_002596_090 Hb_003688_220 Hb_003688_220 Hb_028487_040--Hb_003688_220 Hb_005486_020 Hb_005486_020 Hb_028487_040--Hb_005486_020 Hb_003759_040 Hb_003759_040 Hb_028487_040--Hb_003759_040 Hb_001160_050--Hb_000836_420 Hb_001160_050--Hb_002374_030 Hb_001160_050--Hb_000878_090 Hb_001160_050--Hb_189208_060 Hb_001160_050--Hb_000152_410 Hb_000836_420--Hb_189208_060 Hb_001660_080 Hb_001660_080 Hb_000836_420--Hb_001660_080 Hb_000836_420--Hb_002374_030 Hb_121540_010 Hb_121540_010 Hb_000836_420--Hb_121540_010 Hb_000836_420--Hb_003078_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235402 4.96118 8.23409 3.33293 0.00768505 0.0304442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0146671 0.0837949 1.38671 1.80617

CAGE analysis