Hb_004785_160

Information

Type -
Description -
Location Contig4785: 223296-224633
Sequence    

Annotation

kegg
ID rcu:RCOM_0136890
description ubiquitin-protein ligase, putative
nr
ID XP_012066053.1
description PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
swissprot
ID Q9LSA6
description U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1
trembl
ID A0A067L3L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25208 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 28-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44570: 224264-224680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_160 0.0 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
2 Hb_000110_030 0.0752510171 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
3 Hb_002973_070 0.0876317666 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
4 Hb_004544_010 0.1000512379 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
5 Hb_001141_210 0.1002152111 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
6 Hb_000031_160 0.1118485628 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
7 Hb_043522_010 0.1139964819 - - -
8 Hb_002774_180 0.1154005724 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_177215_020 0.126183462 - - acc synthase, putative [Ricinus communis]
10 Hb_008725_030 0.126380799 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010573_040 0.1277005097 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
12 Hb_001619_020 0.1403759749 - - LRR receptor-like kinase family protein [Medicago truncatula]
13 Hb_004631_100 0.1426711489 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
14 Hb_000509_090 0.1453002848 - - Reticuline oxidase precursor, putative [Ricinus communis]
15 Hb_070634_010 0.146106354 - - TMV resistance protein N, putative [Ricinus communis]
16 Hb_001971_030 0.1462181391 - - PREDICTED: exonuclease 1 [Jatropha curcas]
17 Hb_138086_010 0.1508532394 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
18 Hb_001989_040 0.1513483525 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
19 Hb_003968_010 0.1514545049 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_001635_230 0.1521494204 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004785_160 Hb_004785_160 Hb_000110_030 Hb_000110_030 Hb_004785_160--Hb_000110_030 Hb_002973_070 Hb_002973_070 Hb_004785_160--Hb_002973_070 Hb_004544_010 Hb_004544_010 Hb_004785_160--Hb_004544_010 Hb_001141_210 Hb_001141_210 Hb_004785_160--Hb_001141_210 Hb_000031_160 Hb_000031_160 Hb_004785_160--Hb_000031_160 Hb_043522_010 Hb_043522_010 Hb_004785_160--Hb_043522_010 Hb_010573_040 Hb_010573_040 Hb_000110_030--Hb_010573_040 Hb_000598_020 Hb_000598_020 Hb_000110_030--Hb_000598_020 Hb_000110_030--Hb_000031_160 Hb_000110_030--Hb_001141_210 Hb_177215_020 Hb_177215_020 Hb_000110_030--Hb_177215_020 Hb_002774_180 Hb_002774_180 Hb_002973_070--Hb_002774_180 Hb_002973_070--Hb_001141_210 Hb_001971_030 Hb_001971_030 Hb_002973_070--Hb_001971_030 Hb_002973_070--Hb_000031_160 Hb_002973_070--Hb_004544_010 Hb_004544_010--Hb_043522_010 Hb_008725_030 Hb_008725_030 Hb_004544_010--Hb_008725_030 Hb_004544_010--Hb_001971_030 Hb_004544_010--Hb_000110_030 Hb_001141_210--Hb_002774_180 Hb_001141_210--Hb_000031_160 Hb_138086_010 Hb_138086_010 Hb_001141_210--Hb_138086_010 Hb_070634_010 Hb_070634_010 Hb_001141_210--Hb_070634_010 Hb_001619_020 Hb_001619_020 Hb_000031_160--Hb_001619_020 Hb_005628_050 Hb_005628_050 Hb_000031_160--Hb_005628_050 Hb_005814_010 Hb_005814_010 Hb_000031_160--Hb_005814_010 Hb_001635_230 Hb_001635_230 Hb_000031_160--Hb_001635_230 Hb_043522_010--Hb_008725_030 Hb_012404_050 Hb_012404_050 Hb_043522_010--Hb_012404_050 Hb_043522_010--Hb_002973_070 Hb_043522_010--Hb_001971_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0156356 16.2766 15.7245 11.9026 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0356632 0 0.0524623 7.56065 0.759095

CAGE analysis