Hb_043522_010

Information

Type -
Description -
Location Contig43522: 3365-4101
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42434: 3319-3924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043522_010 0.0 - - -
2 Hb_004544_010 0.0452260647 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
3 Hb_008725_030 0.0924081046 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004785_160 0.1139964819 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
5 Hb_012404_050 0.1279047738 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
6 Hb_002973_070 0.1345538995 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
7 Hb_001971_030 0.1369701091 - - PREDICTED: exonuclease 1 [Jatropha curcas]
8 Hb_000110_030 0.1408416336 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
9 Hb_000862_060 0.1431995202 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003968_010 0.1435384187 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_001635_230 0.1438775284 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_008948_070 0.1451274991 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
13 Hb_096974_010 0.1549920035 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
14 Hb_000031_160 0.1596014373 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
15 Hb_001141_200 0.1607244251 - - PREDICTED: LOW QUALITY PROTEIN: parafibromin [Prunus mume]
16 Hb_001141_210 0.1642739201 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
17 Hb_001846_030 0.1654256948 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
18 Hb_055147_010 0.167892365 - - thioredoxin H-type 7 [Hevea brasiliensis]
19 Hb_017693_040 0.173274306 - - tyrosine kinase family protein [Medicago truncatula]
20 Hb_002774_180 0.1737837609 - - trehalose-6-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_043522_010 Hb_043522_010 Hb_004544_010 Hb_004544_010 Hb_043522_010--Hb_004544_010 Hb_008725_030 Hb_008725_030 Hb_043522_010--Hb_008725_030 Hb_004785_160 Hb_004785_160 Hb_043522_010--Hb_004785_160 Hb_012404_050 Hb_012404_050 Hb_043522_010--Hb_012404_050 Hb_002973_070 Hb_002973_070 Hb_043522_010--Hb_002973_070 Hb_001971_030 Hb_001971_030 Hb_043522_010--Hb_001971_030 Hb_004544_010--Hb_008725_030 Hb_004544_010--Hb_004785_160 Hb_004544_010--Hb_002973_070 Hb_004544_010--Hb_001971_030 Hb_000110_030 Hb_000110_030 Hb_004544_010--Hb_000110_030 Hb_003968_010 Hb_003968_010 Hb_008725_030--Hb_003968_010 Hb_096974_010 Hb_096974_010 Hb_008725_030--Hb_096974_010 Hb_003050_170 Hb_003050_170 Hb_008725_030--Hb_003050_170 Hb_004297_050 Hb_004297_050 Hb_008725_030--Hb_004297_050 Hb_004785_160--Hb_000110_030 Hb_004785_160--Hb_002973_070 Hb_001141_210 Hb_001141_210 Hb_004785_160--Hb_001141_210 Hb_000031_160 Hb_000031_160 Hb_004785_160--Hb_000031_160 Hb_000110_330 Hb_000110_330 Hb_012404_050--Hb_000110_330 Hb_055147_010 Hb_055147_010 Hb_012404_050--Hb_055147_010 Hb_012545_080 Hb_012545_080 Hb_012404_050--Hb_012545_080 Hb_133845_010 Hb_133845_010 Hb_012404_050--Hb_133845_010 Hb_007407_010 Hb_007407_010 Hb_012404_050--Hb_007407_010 Hb_004785_120 Hb_004785_120 Hb_012404_050--Hb_004785_120 Hb_002774_180 Hb_002774_180 Hb_002973_070--Hb_002774_180 Hb_002973_070--Hb_001141_210 Hb_002973_070--Hb_001971_030 Hb_002973_070--Hb_000031_160 Hb_000771_040 Hb_000771_040 Hb_001971_030--Hb_000771_040 Hb_000483_050 Hb_000483_050 Hb_001971_030--Hb_000483_050 Hb_008948_070 Hb_008948_070 Hb_001971_030--Hb_008948_070 Hb_001971_030--Hb_002774_180 Hb_001971_030--Hb_008725_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.13135 3.07138 1.58888 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.0994 0

CAGE analysis