Hb_002641_050

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2641: 92029-93742
Sequence    

Annotation

kegg
ID rcu:RCOM_1000990
description WRKY transcription factor, putative
nr
ID XP_012084106.1
description PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
swissprot
ID Q9FGZ4
description Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1
trembl
ID S5CFS2
description Uncharacterized protein OS=Jatropha curcas GN=WRKY23 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27652: 91931-93521 , PASA_asmbl_27653: 92041-92477 , PASA_asmbl_27654: 93554-93656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_050 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
2 Hb_001318_110 0.1372406527 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
3 Hb_004667_040 0.1413156757 - - ATP binding protein, putative [Ricinus communis]
4 Hb_025236_020 0.1454499447 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
5 Hb_013938_010 0.1474562887 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
6 Hb_002343_020 0.1530377383 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
7 Hb_184008_010 0.155324341 - - putative LRR receptor-like serine/threonine-protein kinase [Morus notabilis]
8 Hb_008453_080 0.1588924273 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X2 [Jatropha curcas]
9 Hb_006831_080 0.160196882 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
10 Hb_000840_070 0.163654044 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_005649_010 0.1644329428 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
12 Hb_000836_610 0.1647041344 - - stem-specific protein TSJT1-like [Jatropha curcas]
13 Hb_068492_010 0.1654513274 - - -
14 Hb_001856_170 0.1665948778 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
15 Hb_000120_310 0.1683792295 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
16 Hb_000051_030 0.171030022 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
17 Hb_004586_240 0.1741280164 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
18 Hb_000421_020 0.1770285458 - - ascorbate peroxidase [Hevea brasiliensis]
19 Hb_000008_430 0.1775138194 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
20 Hb_000347_020 0.177856252 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_002641_050 Hb_002641_050 Hb_001318_110 Hb_001318_110 Hb_002641_050--Hb_001318_110 Hb_004667_040 Hb_004667_040 Hb_002641_050--Hb_004667_040 Hb_025236_020 Hb_025236_020 Hb_002641_050--Hb_025236_020 Hb_013938_010 Hb_013938_010 Hb_002641_050--Hb_013938_010 Hb_002343_020 Hb_002343_020 Hb_002641_050--Hb_002343_020 Hb_184008_010 Hb_184008_010 Hb_002641_050--Hb_184008_010 Hb_005649_010 Hb_005649_010 Hb_001318_110--Hb_005649_010 Hb_001318_110--Hb_013938_010 Hb_001832_240 Hb_001832_240 Hb_001318_110--Hb_001832_240 Hb_005628_050 Hb_005628_050 Hb_001318_110--Hb_005628_050 Hb_000031_160 Hb_000031_160 Hb_001318_110--Hb_000031_160 Hb_095471_020 Hb_095471_020 Hb_004667_040--Hb_095471_020 Hb_065755_020 Hb_065755_020 Hb_004667_040--Hb_065755_020 Hb_000069_430 Hb_000069_430 Hb_004667_040--Hb_000069_430 Hb_004667_040--Hb_025236_020 Hb_004667_040--Hb_002343_020 Hb_025236_020--Hb_002343_020 Hb_000421_020 Hb_000421_020 Hb_025236_020--Hb_000421_020 Hb_005814_010 Hb_005814_010 Hb_025236_020--Hb_005814_010 Hb_052434_010 Hb_052434_010 Hb_025236_020--Hb_052434_010 Hb_003529_230 Hb_003529_230 Hb_025236_020--Hb_003529_230 Hb_000771_070 Hb_000771_070 Hb_025236_020--Hb_000771_070 Hb_013938_010--Hb_005649_010 Hb_013938_010--Hb_184008_010 Hb_003964_010 Hb_003964_010 Hb_013938_010--Hb_003964_010 Hb_013938_010--Hb_002343_020 Hb_043987_010 Hb_043987_010 Hb_013938_010--Hb_043987_010 Hb_000402_030 Hb_000402_030 Hb_002343_020--Hb_000402_030 Hb_002343_020--Hb_005649_010 Hb_004032_090 Hb_004032_090 Hb_002343_020--Hb_004032_090 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_002343_020--Hb_005375_070 Hb_000001_010 Hb_000001_010 Hb_184008_010--Hb_000001_010 Hb_184008_010--Hb_052434_010 Hb_184008_010--Hb_001318_110 Hb_000008_430 Hb_000008_430 Hb_184008_010--Hb_000008_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.67749 40.0386 36.9527 19.6396 0.662197 3.04568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30782 1.79306 0.493803 29.2722 5.4342

CAGE analysis