Hb_000069_430

Information

Type -
Description -
Location Contig69: 437694-442322
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17120g
description POPTRDRAFT_552266; hypothetical protein
nr
ID XP_012083222.1
description PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
swissprot
ID O65717
description Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1
trembl
ID A0A067JX85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14268 PE=4 SV=1
Gene Ontology
ID GO:0005221
description cyclic nucleotide-gated ion channel 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54237: 437700-441498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_430 0.0 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
2 Hb_164926_050 0.1254516736 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
3 Hb_002078_250 0.1260270763 - - conserved hypothetical protein [Ricinus communis]
4 Hb_149484_010 0.1264295667 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
5 Hb_005539_100 0.1288379387 - - nucleoside transporter, putative [Ricinus communis]
6 Hb_023386_050 0.1304225861 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005000_050 0.1327151148 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
8 Hb_046109_010 0.1334687015 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_002510_100 0.1347721392 - - Root phototropism protein, putative [Ricinus communis]
10 Hb_003964_010 0.1363215114 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
11 Hb_000100_210 0.1384413842 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
12 Hb_006002_010 0.1421191201 transcription factor TF Family: MYB Myb domain protein 5 isoform 1 [Theobroma cacao]
13 Hb_002235_370 0.1439129148 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
14 Hb_012308_050 0.1448967038 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
15 Hb_003656_170 0.1466131552 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
16 Hb_002324_050 0.1483520999 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
17 Hb_002849_180 0.1493343356 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
18 Hb_002343_020 0.1501047218 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
19 Hb_033053_010 0.1542917903 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
20 Hb_002375_060 0.1559652382 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]

Gene co-expression network

sample Hb_000069_430 Hb_000069_430 Hb_164926_050 Hb_164926_050 Hb_000069_430--Hb_164926_050 Hb_002078_250 Hb_002078_250 Hb_000069_430--Hb_002078_250 Hb_149484_010 Hb_149484_010 Hb_000069_430--Hb_149484_010 Hb_005539_100 Hb_005539_100 Hb_000069_430--Hb_005539_100 Hb_023386_050 Hb_023386_050 Hb_000069_430--Hb_023386_050 Hb_005000_050 Hb_005000_050 Hb_000069_430--Hb_005000_050 Hb_033053_010 Hb_033053_010 Hb_164926_050--Hb_033053_010 Hb_164926_050--Hb_002078_250 Hb_007574_050 Hb_007574_050 Hb_164926_050--Hb_007574_050 Hb_164926_050--Hb_005000_050 Hb_002235_370 Hb_002235_370 Hb_164926_050--Hb_002235_370 Hb_000411_050 Hb_000411_050 Hb_002078_250--Hb_000411_050 Hb_003656_170 Hb_003656_170 Hb_002078_250--Hb_003656_170 Hb_003964_010 Hb_003964_010 Hb_002078_250--Hb_003964_010 Hb_001123_170 Hb_001123_170 Hb_002078_250--Hb_001123_170 Hb_004544_090 Hb_004544_090 Hb_002078_250--Hb_004544_090 Hb_003025_150 Hb_003025_150 Hb_002078_250--Hb_003025_150 Hb_003905_040 Hb_003905_040 Hb_149484_010--Hb_003905_040 Hb_006052_060 Hb_006052_060 Hb_149484_010--Hb_006052_060 Hb_003430_070 Hb_003430_070 Hb_149484_010--Hb_003430_070 Hb_149484_010--Hb_005000_050 Hb_000402_030 Hb_000402_030 Hb_149484_010--Hb_000402_030 Hb_005375_070 Hb_005375_070 Hb_149484_010--Hb_005375_070 Hb_172676_010 Hb_172676_010 Hb_005539_100--Hb_172676_010 Hb_011381_070 Hb_011381_070 Hb_005539_100--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_005539_100--Hb_001158_120 Hb_000366_050 Hb_000366_050 Hb_005539_100--Hb_000366_050 Hb_002073_020 Hb_002073_020 Hb_005539_100--Hb_002073_020 Hb_000369_070 Hb_000369_070 Hb_005539_100--Hb_000369_070 Hb_023386_050--Hb_001123_170 Hb_000100_210 Hb_000100_210 Hb_023386_050--Hb_000100_210 Hb_002375_060 Hb_002375_060 Hb_023386_050--Hb_002375_060 Hb_023386_050--Hb_003656_170 Hb_002324_050 Hb_002324_050 Hb_023386_050--Hb_002324_050 Hb_023386_050--Hb_005000_050 Hb_005000_050--Hb_005375_070 Hb_001951_240 Hb_001951_240 Hb_005000_050--Hb_001951_240 Hb_005000_050--Hb_007574_050 Hb_004712_160 Hb_004712_160 Hb_005000_050--Hb_004712_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.928918 11.0809 7.1977 8.20877 1.26402 0.396308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0188382 0.163056 0 4.64052 3.83873

CAGE analysis