Hb_000411_050

Information

Type -
Description -
Location Contig411: 89468-91152
Sequence    

Annotation

kegg
ID atr:s00066p00166230
description AMTR_s00066p00166230; hypothetical protein
nr
ID ERN20267.1
description hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID U5DFM8
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00066p00166230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000411_050 0.0 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
2 Hb_002450_180 0.0786627902 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002078_250 0.084698556 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000847_050 0.0873531657 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
5 Hb_004544_090 0.092233751 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000454_200 0.1078322102 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
7 Hb_000679_260 0.1099656834 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001123_170 0.1101989488 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006634_090 0.112082752 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
10 Hb_004166_020 0.1157898908 - - -
11 Hb_005087_030 0.1167559025 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
12 Hb_001048_070 0.118049007 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
13 Hb_001776_100 0.118314894 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
14 Hb_000739_160 0.1196154749 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000092_030 0.1210978725 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
16 Hb_000946_050 0.1211164966 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000382_030 0.1221097458 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
18 Hb_014361_020 0.1253562135 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
19 Hb_006934_020 0.1266993336 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
20 Hb_003025_150 0.1276358926 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000411_050 Hb_000411_050 Hb_002450_180 Hb_002450_180 Hb_000411_050--Hb_002450_180 Hb_002078_250 Hb_002078_250 Hb_000411_050--Hb_002078_250 Hb_000847_050 Hb_000847_050 Hb_000411_050--Hb_000847_050 Hb_004544_090 Hb_004544_090 Hb_000411_050--Hb_004544_090 Hb_000454_200 Hb_000454_200 Hb_000411_050--Hb_000454_200 Hb_000679_260 Hb_000679_260 Hb_000411_050--Hb_000679_260 Hb_002450_180--Hb_000454_200 Hb_002450_180--Hb_000847_050 Hb_000946_050 Hb_000946_050 Hb_002450_180--Hb_000946_050 Hb_006634_090 Hb_006634_090 Hb_002450_180--Hb_006634_090 Hb_003376_300 Hb_003376_300 Hb_002450_180--Hb_003376_300 Hb_003656_170 Hb_003656_170 Hb_002078_250--Hb_003656_170 Hb_003964_010 Hb_003964_010 Hb_002078_250--Hb_003964_010 Hb_001123_170 Hb_001123_170 Hb_002078_250--Hb_001123_170 Hb_002078_250--Hb_004544_090 Hb_003025_150 Hb_003025_150 Hb_002078_250--Hb_003025_150 Hb_000847_050--Hb_000454_200 Hb_006934_020 Hb_006934_020 Hb_000847_050--Hb_006934_020 Hb_000847_050--Hb_006634_090 Hb_000497_100 Hb_000497_100 Hb_000847_050--Hb_000497_100 Hb_004544_090--Hb_001123_170 Hb_002276_100 Hb_002276_100 Hb_004544_090--Hb_002276_100 Hb_020285_010 Hb_020285_010 Hb_004544_090--Hb_020285_010 Hb_006002_010 Hb_006002_010 Hb_004544_090--Hb_006002_010 Hb_007894_030 Hb_007894_030 Hb_004544_090--Hb_007894_030 Hb_000454_200--Hb_003376_300 Hb_005679_120 Hb_005679_120 Hb_000454_200--Hb_005679_120 Hb_001856_160 Hb_001856_160 Hb_000454_200--Hb_001856_160 Hb_000679_260--Hb_004544_090 Hb_000679_260--Hb_001123_170 Hb_000424_100 Hb_000424_100 Hb_000679_260--Hb_000424_100 Hb_005087_030 Hb_005087_030 Hb_000679_260--Hb_005087_030 Hb_000679_260--Hb_020285_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103083 8.97368 6.6237 8.76505 0.206926 0.262675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0371303 0 7.05333 3.12668

CAGE analysis