Hb_000424_100

Information

Type desease resistance
Description Gene Name: G-alpha
Location Contig424: 126463-134405
Sequence    

Annotation

kegg
ID rcu:RCOM_0707670
description GTP-binding protein (p) alpha subunit, gpa1, putative
nr
ID XP_002516152.1
description GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis]
swissprot
ID Q40224
description Guanine nucleotide-binding protein alpha-1 subunit OS=Lupinus luteus GN=GPA1 PE=2 SV=1
trembl
ID B9RQY3
description GTP-binding protein (P) alpha subunit, gpa1, putative OS=Ricinus communis GN=RCOM_0707670 PE=4 SV=1
Gene Ontology
ID GO:0003924
description guanine nucleotide-binding protein alpha-1 subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41916: 128238-128766 , PASA_asmbl_41917: 132967-134688 , PASA_asmbl_41918: 133262-134206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_100 0.0 desease resistance Gene Name: G-alpha GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis]
2 Hb_000739_160 0.1267836125 - - DNA binding protein, putative [Ricinus communis]
3 Hb_000679_260 0.1283364492 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000411_050 0.1371017106 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
5 Hb_166009_010 0.1371410941 - - carbonyl reductase, putative [Ricinus communis]
6 Hb_006920_040 0.1409510759 - - PREDICTED: uncharacterized protein LOC103341644 [Prunus mume]
7 Hb_000096_210 0.1430976696 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
8 Hb_001008_110 0.143220338 - - -
9 Hb_003106_230 0.1462650139 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
10 Hb_004656_010 0.1477069835 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
11 Hb_006634_090 0.1483908021 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
12 Hb_000847_050 0.1499380637 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
13 Hb_039022_020 0.1502335915 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
14 Hb_011472_020 0.1508131709 - - PREDICTED: mucin-17-like [Jatropha curcas]
15 Hb_002450_180 0.1511841845 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000210_140 0.1526683966 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
17 Hb_000417_280 0.154855262 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009615_100 0.1559941299 - - hypothetical protein JCGZ_24459 [Jatropha curcas]
19 Hb_006153_130 0.1566334433 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_003376_300 0.158462599 - - Aquaporin PIP2.2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000424_100 Hb_000424_100 Hb_000739_160 Hb_000739_160 Hb_000424_100--Hb_000739_160 Hb_000679_260 Hb_000679_260 Hb_000424_100--Hb_000679_260 Hb_000411_050 Hb_000411_050 Hb_000424_100--Hb_000411_050 Hb_166009_010 Hb_166009_010 Hb_000424_100--Hb_166009_010 Hb_006920_040 Hb_006920_040 Hb_000424_100--Hb_006920_040 Hb_000096_210 Hb_000096_210 Hb_000424_100--Hb_000096_210 Hb_003106_110 Hb_003106_110 Hb_000739_160--Hb_003106_110 Hb_000739_160--Hb_000096_210 Hb_006634_090 Hb_006634_090 Hb_000739_160--Hb_006634_090 Hb_006934_020 Hb_006934_020 Hb_000739_160--Hb_006934_020 Hb_002301_370 Hb_002301_370 Hb_000739_160--Hb_002301_370 Hb_000417_280 Hb_000417_280 Hb_000739_160--Hb_000417_280 Hb_000679_260--Hb_000411_050 Hb_004544_090 Hb_004544_090 Hb_000679_260--Hb_004544_090 Hb_001123_170 Hb_001123_170 Hb_000679_260--Hb_001123_170 Hb_005087_030 Hb_005087_030 Hb_000679_260--Hb_005087_030 Hb_020285_010 Hb_020285_010 Hb_000679_260--Hb_020285_010 Hb_002450_180 Hb_002450_180 Hb_000411_050--Hb_002450_180 Hb_002078_250 Hb_002078_250 Hb_000411_050--Hb_002078_250 Hb_000847_050 Hb_000847_050 Hb_000411_050--Hb_000847_050 Hb_000411_050--Hb_004544_090 Hb_000454_200 Hb_000454_200 Hb_000411_050--Hb_000454_200 Hb_000009_130 Hb_000009_130 Hb_166009_010--Hb_000009_130 Hb_039022_020 Hb_039022_020 Hb_166009_010--Hb_039022_020 Hb_004129_110 Hb_004129_110 Hb_166009_010--Hb_004129_110 Hb_011472_020 Hb_011472_020 Hb_166009_010--Hb_011472_020 Hb_003376_300 Hb_003376_300 Hb_166009_010--Hb_003376_300 Hb_000022_280 Hb_000022_280 Hb_166009_010--Hb_000022_280 Hb_008554_090 Hb_008554_090 Hb_006920_040--Hb_008554_090 Hb_001345_010 Hb_001345_010 Hb_006920_040--Hb_001345_010 Hb_002110_060 Hb_002110_060 Hb_006920_040--Hb_002110_060 Hb_006920_040--Hb_011472_020 Hb_150730_010 Hb_150730_010 Hb_006920_040--Hb_150730_010 Hb_000946_050 Hb_000946_050 Hb_000096_210--Hb_000946_050 Hb_009554_030 Hb_009554_030 Hb_000096_210--Hb_009554_030 Hb_014250_010 Hb_014250_010 Hb_000096_210--Hb_014250_010 Hb_000096_210--Hb_039022_020 Hb_004122_060 Hb_004122_060 Hb_000096_210--Hb_004122_060 Hb_005766_010 Hb_005766_010 Hb_000096_210--Hb_005766_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0565853 6.2404 6.33948 6.80586 0.111127 0.923591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.1476 2.61707

CAGE analysis