Hb_000679_260

Information

Type -
Description -
Location Contig679: 177710-178861
Sequence    

Annotation

kegg
ID rcu:RCOM_0923920
description hypothetical protein
nr
ID XP_002515506.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RP37
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0923920 PE=4 SV=1
Gene Ontology
ID GO:0016020
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53709: 178148-178659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000411_050 0.1099656834 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
3 Hb_004544_090 0.1149444501 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001123_170 0.1263880743 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000424_100 0.1283364492 desease resistance Gene Name: G-alpha GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis]
6 Hb_005087_030 0.1337857332 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
7 Hb_020285_010 0.141247803 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
8 Hb_000382_030 0.1415626328 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
9 Hb_000085_220 0.1417601768 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005784_020 0.142488426 - - Protein MKS1, putative [Ricinus communis]
11 Hb_000847_050 0.143516484 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
12 Hb_001377_130 0.1442178482 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
13 Hb_014361_020 0.1451551682 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
14 Hb_004166_020 0.1453527961 - - -
15 Hb_023386_050 0.1498822359 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002450_180 0.1501174891 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006634_090 0.152552826 - - PREDICTED: uncharacterized protein LOC105646581 [Jatropha curcas]
18 Hb_006934_020 0.1528404774 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]
19 Hb_006483_090 0.1537377284 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
20 Hb_002078_250 0.153816935 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000679_260 Hb_000679_260 Hb_000411_050 Hb_000411_050 Hb_000679_260--Hb_000411_050 Hb_004544_090 Hb_004544_090 Hb_000679_260--Hb_004544_090 Hb_001123_170 Hb_001123_170 Hb_000679_260--Hb_001123_170 Hb_000424_100 Hb_000424_100 Hb_000679_260--Hb_000424_100 Hb_005087_030 Hb_005087_030 Hb_000679_260--Hb_005087_030 Hb_020285_010 Hb_020285_010 Hb_000679_260--Hb_020285_010 Hb_002450_180 Hb_002450_180 Hb_000411_050--Hb_002450_180 Hb_002078_250 Hb_002078_250 Hb_000411_050--Hb_002078_250 Hb_000847_050 Hb_000847_050 Hb_000411_050--Hb_000847_050 Hb_000411_050--Hb_004544_090 Hb_000454_200 Hb_000454_200 Hb_000411_050--Hb_000454_200 Hb_004544_090--Hb_001123_170 Hb_002276_100 Hb_002276_100 Hb_004544_090--Hb_002276_100 Hb_004544_090--Hb_020285_010 Hb_006002_010 Hb_006002_010 Hb_004544_090--Hb_006002_010 Hb_007894_030 Hb_007894_030 Hb_004544_090--Hb_007894_030 Hb_003656_170 Hb_003656_170 Hb_001123_170--Hb_003656_170 Hb_001377_130 Hb_001377_130 Hb_001123_170--Hb_001377_130 Hb_000382_030 Hb_000382_030 Hb_001123_170--Hb_000382_030 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_001123_170--Hb_002078_250 Hb_000739_160 Hb_000739_160 Hb_000424_100--Hb_000739_160 Hb_000424_100--Hb_000411_050 Hb_166009_010 Hb_166009_010 Hb_000424_100--Hb_166009_010 Hb_006920_040 Hb_006920_040 Hb_000424_100--Hb_006920_040 Hb_000096_210 Hb_000096_210 Hb_000424_100--Hb_000096_210 Hb_168068_010 Hb_168068_010 Hb_005087_030--Hb_168068_010 Hb_003376_300 Hb_003376_300 Hb_005087_030--Hb_003376_300 Hb_131662_010 Hb_131662_010 Hb_005087_030--Hb_131662_010 Hb_005087_030--Hb_002450_180 Hb_005087_030--Hb_000411_050 Hb_000771_030 Hb_000771_030 Hb_005087_030--Hb_000771_030 Hb_000497_100 Hb_000497_100 Hb_020285_010--Hb_000497_100 Hb_046101_010 Hb_046101_010 Hb_020285_010--Hb_046101_010 Hb_001369_070 Hb_001369_070 Hb_020285_010--Hb_001369_070 Hb_020285_010--Hb_007894_030 Hb_038777_010 Hb_038777_010 Hb_020285_010--Hb_038777_010 Hb_020285_010--Hb_002276_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0186454 2.54819 1.67642 1.81589 0 0.295527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.84085 0.83042

CAGE analysis