Hb_006002_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig6002: 11829-12923
Sequence    

Annotation

kegg
ID tcc:TCM_037383
description Myb domain protein 5 isoform 1
nr
ID XP_007012415.1
description Myb domain protein 5 isoform 1 [Theobroma cacao]
swissprot
ID Q38850
description Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1
trembl
ID A0A061GSC7
description Myb domain protein 5 isoform 1 OS=Theobroma cacao GN=TCM_037383 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb114-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50555: 12538-12845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006002_010 0.0 transcription factor TF Family: MYB Myb domain protein 5 isoform 1 [Theobroma cacao]
2 Hb_004544_090 0.0996285499 - - cytochrome P450, putative [Ricinus communis]
3 Hb_003497_020 0.1298640321 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
4 Hb_002078_250 0.138420995 - - conserved hypothetical protein [Ricinus communis]
5 Hb_017604_020 0.1389742079 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
6 Hb_002324_050 0.1403826476 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
7 Hb_000069_430 0.1421191201 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
8 Hb_003964_010 0.1451949846 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
9 Hb_002276_100 0.1463615034 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
10 Hb_020285_010 0.1469876009 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
11 Hb_001699_050 0.1477784323 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
12 Hb_001123_170 0.1489328034 - - conserved hypothetical protein [Ricinus communis]
13 Hb_046101_010 0.1492906633 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
14 Hb_000914_110 0.1506470773 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
15 Hb_000411_050 0.1510457638 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
16 Hb_003656_170 0.1510961684 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
17 Hb_000037_010 0.1511950463 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
18 Hb_014361_020 0.151811334 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
19 Hb_000007_160 0.1542730136 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
20 Hb_023386_050 0.1554652932 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006002_010 Hb_006002_010 Hb_004544_090 Hb_004544_090 Hb_006002_010--Hb_004544_090 Hb_003497_020 Hb_003497_020 Hb_006002_010--Hb_003497_020 Hb_002078_250 Hb_002078_250 Hb_006002_010--Hb_002078_250 Hb_017604_020 Hb_017604_020 Hb_006002_010--Hb_017604_020 Hb_002324_050 Hb_002324_050 Hb_006002_010--Hb_002324_050 Hb_000069_430 Hb_000069_430 Hb_006002_010--Hb_000069_430 Hb_001123_170 Hb_001123_170 Hb_004544_090--Hb_001123_170 Hb_000411_050 Hb_000411_050 Hb_004544_090--Hb_000411_050 Hb_002276_100 Hb_002276_100 Hb_004544_090--Hb_002276_100 Hb_020285_010 Hb_020285_010 Hb_004544_090--Hb_020285_010 Hb_007894_030 Hb_007894_030 Hb_004544_090--Hb_007894_030 Hb_008226_120 Hb_008226_120 Hb_003497_020--Hb_008226_120 Hb_003497_020--Hb_004544_090 Hb_001894_040 Hb_001894_040 Hb_003497_020--Hb_001894_040 Hb_000037_010 Hb_000037_010 Hb_003497_020--Hb_000037_010 Hb_000417_280 Hb_000417_280 Hb_003497_020--Hb_000417_280 Hb_002078_250--Hb_000411_050 Hb_003656_170 Hb_003656_170 Hb_002078_250--Hb_003656_170 Hb_003964_010 Hb_003964_010 Hb_002078_250--Hb_003964_010 Hb_002078_250--Hb_001123_170 Hb_002078_250--Hb_004544_090 Hb_003025_150 Hb_003025_150 Hb_002078_250--Hb_003025_150 Hb_001699_050 Hb_001699_050 Hb_017604_020--Hb_001699_050 Hb_017604_020--Hb_002276_100 Hb_000808_160 Hb_000808_160 Hb_017604_020--Hb_000808_160 Hb_003556_070 Hb_003556_070 Hb_017604_020--Hb_003556_070 Hb_017604_020--Hb_004544_090 Hb_009510_050 Hb_009510_050 Hb_017604_020--Hb_009510_050 Hb_002324_050--Hb_003656_170 Hb_002324_040 Hb_002324_040 Hb_002324_050--Hb_002324_040 Hb_004032_250 Hb_004032_250 Hb_002324_050--Hb_004032_250 Hb_002324_050--Hb_003964_010 Hb_002324_050--Hb_003025_150 Hb_002324_050--Hb_001123_170 Hb_164926_050 Hb_164926_050 Hb_000069_430--Hb_164926_050 Hb_000069_430--Hb_002078_250 Hb_149484_010 Hb_149484_010 Hb_000069_430--Hb_149484_010 Hb_005539_100 Hb_005539_100 Hb_000069_430--Hb_005539_100 Hb_023386_050 Hb_023386_050 Hb_000069_430--Hb_023386_050 Hb_005000_050 Hb_005000_050 Hb_000069_430--Hb_005000_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1608 5.75623 2.26777 3.02852 0.585121 0.0473328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.46044 1.66307

CAGE analysis