Hb_004032_250

Information

Type -
Description -
Location Contig4032: 263202-263876
Sequence    

Annotation

kegg
ID rcu:RCOM_1602500
description hypothetical protein
nr
ID XP_002510752.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID B9R8V9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002324_050 0.1029796667 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
3 Hb_001699_050 0.1128038971 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
4 Hb_002324_040 0.1214013917 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
5 Hb_064047_010 0.1236633815 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004282_040 0.1333461136 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
7 Hb_010381_110 0.1372290006 - - PRA1 family protein [Theobroma cacao]
8 Hb_003025_150 0.1469057151 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001071_060 0.147990341 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
10 Hb_000007_160 0.1494260855 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
11 Hb_000236_120 0.1504540328 - - -
12 Hb_001195_500 0.1511635446 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
13 Hb_003106_180 0.1511792209 - - Peroxidase 65 precursor, putative [Ricinus communis]
14 Hb_003579_040 0.1530310649 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
15 Hb_000692_230 0.1535376258 - - phospholipase d delta, putative [Ricinus communis]
16 Hb_003656_170 0.1547815806 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
17 Hb_000808_160 0.155007368 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
18 Hb_017857_010 0.1563454922 - - -
19 Hb_005695_020 0.1563767573 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
20 Hb_000976_340 0.1568608822 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004032_250 Hb_004032_250 Hb_002324_050 Hb_002324_050 Hb_004032_250--Hb_002324_050 Hb_001699_050 Hb_001699_050 Hb_004032_250--Hb_001699_050 Hb_002324_040 Hb_002324_040 Hb_004032_250--Hb_002324_040 Hb_064047_010 Hb_064047_010 Hb_004032_250--Hb_064047_010 Hb_004282_040 Hb_004282_040 Hb_004032_250--Hb_004282_040 Hb_010381_110 Hb_010381_110 Hb_004032_250--Hb_010381_110 Hb_003656_170 Hb_003656_170 Hb_002324_050--Hb_003656_170 Hb_002324_050--Hb_002324_040 Hb_003964_010 Hb_003964_010 Hb_002324_050--Hb_003964_010 Hb_003025_150 Hb_003025_150 Hb_002324_050--Hb_003025_150 Hb_001123_170 Hb_001123_170 Hb_002324_050--Hb_001123_170 Hb_017604_020 Hb_017604_020 Hb_001699_050--Hb_017604_020 Hb_000007_160 Hb_000007_160 Hb_001699_050--Hb_000007_160 Hb_000808_160 Hb_000808_160 Hb_001699_050--Hb_000808_160 Hb_009510_050 Hb_009510_050 Hb_001699_050--Hb_009510_050 Hb_001699_050--Hb_002324_050 Hb_002324_040--Hb_003025_150 Hb_012727_010 Hb_012727_010 Hb_002324_040--Hb_012727_010 Hb_003579_040 Hb_003579_040 Hb_002324_040--Hb_003579_040 Hb_002324_040--Hb_064047_010 Hb_000816_050 Hb_000816_050 Hb_064047_010--Hb_000816_050 Hb_005784_020 Hb_005784_020 Hb_064047_010--Hb_005784_020 Hb_002431_090 Hb_002431_090 Hb_064047_010--Hb_002431_090 Hb_064047_010--Hb_010381_110 Hb_000976_340 Hb_000976_340 Hb_064047_010--Hb_000976_340 Hb_000116_290 Hb_000116_290 Hb_004282_040--Hb_000116_290 Hb_002849_110 Hb_002849_110 Hb_004282_040--Hb_002849_110 Hb_000742_260 Hb_000742_260 Hb_004282_040--Hb_000742_260 Hb_009476_160 Hb_009476_160 Hb_004282_040--Hb_009476_160 Hb_004282_040--Hb_000976_340 Hb_000692_230 Hb_000692_230 Hb_004282_040--Hb_000692_230 Hb_001148_040 Hb_001148_040 Hb_010381_110--Hb_001148_040 Hb_005695_020 Hb_005695_020 Hb_010381_110--Hb_005695_020 Hb_001259_100 Hb_001259_100 Hb_010381_110--Hb_001259_100 Hb_003371_260 Hb_003371_260 Hb_010381_110--Hb_003371_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3876 34.9705 8.35877 24.6631 2.38495 0.460641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36218 0.40155 0.475636 13.1193 6.19228

CAGE analysis