Hb_001148_040

Information

Type -
Description -
Location Contig1148: 46522-47916
Sequence    

Annotation

kegg
ID pmum:103343781
description putative disease resistance protein RGA4
nr
ID KDP37632.1
description hypothetical protein JCGZ_07831 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07831 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rga1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001148_040 0.0 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
2 Hb_000007_160 0.1023960322 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
3 Hb_140848_010 0.1152048425 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
4 Hb_010381_110 0.1203074362 - - PRA1 family protein [Theobroma cacao]
5 Hb_008406_020 0.1214289352 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
6 Hb_002609_150 0.1256465979 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
7 Hb_000778_020 0.1307714049 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
8 Hb_001879_050 0.1334714791 - - Disease resistance protein RFL1, putative [Ricinus communis]
9 Hb_001401_070 0.1426844302 - - glycogenin, putative [Ricinus communis]
10 Hb_000189_120 0.1429665368 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
11 Hb_000429_110 0.1435503966 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
12 Hb_003430_020 0.1440949907 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
13 Hb_002928_180 0.1447095046 - - catalase CAT1 [Manihot esculenta]
14 Hb_000236_110 0.1448045528 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
15 Hb_009581_040 0.145977363 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
16 Hb_004195_170 0.1470561023 - - ATP binding protein, putative [Ricinus communis]
17 Hb_068332_010 0.1474129804 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_001195_500 0.1497307192 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
19 Hb_000657_030 0.1520153985 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
20 Hb_005183_200 0.1534940029 - - EG964 [Manihot glaziovii]

Gene co-expression network

sample Hb_001148_040 Hb_001148_040 Hb_000007_160 Hb_000007_160 Hb_001148_040--Hb_000007_160 Hb_140848_010 Hb_140848_010 Hb_001148_040--Hb_140848_010 Hb_010381_110 Hb_010381_110 Hb_001148_040--Hb_010381_110 Hb_008406_020 Hb_008406_020 Hb_001148_040--Hb_008406_020 Hb_002609_150 Hb_002609_150 Hb_001148_040--Hb_002609_150 Hb_000778_020 Hb_000778_020 Hb_001148_040--Hb_000778_020 Hb_001699_050 Hb_001699_050 Hb_000007_160--Hb_001699_050 Hb_001195_500 Hb_001195_500 Hb_000007_160--Hb_001195_500 Hb_000007_160--Hb_002609_150 Hb_008175_030 Hb_008175_030 Hb_000007_160--Hb_008175_030 Hb_000007_160--Hb_000778_020 Hb_002735_010 Hb_002735_010 Hb_140848_010--Hb_002735_010 Hb_015473_010 Hb_015473_010 Hb_140848_010--Hb_015473_010 Hb_002053_090 Hb_002053_090 Hb_140848_010--Hb_002053_090 Hb_000152_250 Hb_000152_250 Hb_140848_010--Hb_000152_250 Hb_002110_210 Hb_002110_210 Hb_140848_010--Hb_002110_210 Hb_064047_010 Hb_064047_010 Hb_010381_110--Hb_064047_010 Hb_005695_020 Hb_005695_020 Hb_010381_110--Hb_005695_020 Hb_001259_100 Hb_001259_100 Hb_010381_110--Hb_001259_100 Hb_004032_250 Hb_004032_250 Hb_010381_110--Hb_004032_250 Hb_003371_260 Hb_003371_260 Hb_010381_110--Hb_003371_260 Hb_009581_040 Hb_009581_040 Hb_008406_020--Hb_009581_040 Hb_000907_120 Hb_000907_120 Hb_008406_020--Hb_000907_120 Hb_002276_100 Hb_002276_100 Hb_008406_020--Hb_002276_100 Hb_008226_120 Hb_008226_120 Hb_008406_020--Hb_008226_120 Hb_003430_020 Hb_003430_020 Hb_008406_020--Hb_003430_020 Hb_068332_010 Hb_068332_010 Hb_008406_020--Hb_068332_010 Hb_001879_050 Hb_001879_050 Hb_002609_150--Hb_001879_050 Hb_000532_130 Hb_000532_130 Hb_002609_150--Hb_000532_130 Hb_000172_010 Hb_000172_010 Hb_002609_150--Hb_000172_010 Hb_002739_060 Hb_002739_060 Hb_002609_150--Hb_002739_060 Hb_000778_020--Hb_008175_030 Hb_057079_020 Hb_057079_020 Hb_000778_020--Hb_057079_020 Hb_002928_180 Hb_002928_180 Hb_000778_020--Hb_002928_180 Hb_010253_020 Hb_010253_020 Hb_000778_020--Hb_010253_020 Hb_001408_150 Hb_001408_150 Hb_000778_020--Hb_001408_150 Hb_000189_120 Hb_000189_120 Hb_000778_020--Hb_000189_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68047 37.1155 3.60933 19.5873 1.9103 0.940117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.27173 0.160327 0.40046 22.2832 4.40223

CAGE analysis