Hb_000007_160

Information

Type -
Description -
Location Contig7: 153067-156929
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10970g
description POPTRDRAFT_820583; hypothetical protein
nr
ID XP_002311408.2
description hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
swissprot
ID Q8RY65
description Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1
trembl
ID B9HIT4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s10970g PE=3 SV=2
Gene Ontology
ID GO:0016021
description protein nsp-interacting kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54743: 153111-156717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_160 0.0 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
2 Hb_001148_040 0.1023960322 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
3 Hb_001699_050 0.1232148251 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
4 Hb_001195_500 0.1268371603 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
5 Hb_002609_150 0.1268496723 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
6 Hb_008175_030 0.1276282832 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
7 Hb_000778_020 0.1301786519 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
8 Hb_000189_120 0.1391864391 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
9 Hb_001608_030 0.1415447492 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
10 Hb_008406_020 0.1430154697 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
11 Hb_002739_060 0.1471881529 - - -
12 Hb_017604_020 0.1483793953 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
13 Hb_001408_150 0.1491518722 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
14 Hb_004032_250 0.1494260855 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001071_060 0.1533488849 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
16 Hb_006002_010 0.1542730136 transcription factor TF Family: MYB Myb domain protein 5 isoform 1 [Theobroma cacao]
17 Hb_003556_070 0.1562796145 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_000532_130 0.1570343642 - - hypothetical protein [Anabaena sp. PCC 7108]
19 Hb_001584_010 0.1571412632 - - kelch repeat protein, putative [Ricinus communis]
20 Hb_000236_120 0.1615290575 - - -

Gene co-expression network

sample Hb_000007_160 Hb_000007_160 Hb_001148_040 Hb_001148_040 Hb_000007_160--Hb_001148_040 Hb_001699_050 Hb_001699_050 Hb_000007_160--Hb_001699_050 Hb_001195_500 Hb_001195_500 Hb_000007_160--Hb_001195_500 Hb_002609_150 Hb_002609_150 Hb_000007_160--Hb_002609_150 Hb_008175_030 Hb_008175_030 Hb_000007_160--Hb_008175_030 Hb_000778_020 Hb_000778_020 Hb_000007_160--Hb_000778_020 Hb_140848_010 Hb_140848_010 Hb_001148_040--Hb_140848_010 Hb_010381_110 Hb_010381_110 Hb_001148_040--Hb_010381_110 Hb_008406_020 Hb_008406_020 Hb_001148_040--Hb_008406_020 Hb_001148_040--Hb_002609_150 Hb_001148_040--Hb_000778_020 Hb_017604_020 Hb_017604_020 Hb_001699_050--Hb_017604_020 Hb_004032_250 Hb_004032_250 Hb_001699_050--Hb_004032_250 Hb_000808_160 Hb_000808_160 Hb_001699_050--Hb_000808_160 Hb_009510_050 Hb_009510_050 Hb_001699_050--Hb_009510_050 Hb_002324_050 Hb_002324_050 Hb_001699_050--Hb_002324_050 Hb_001377_500 Hb_001377_500 Hb_001195_500--Hb_001377_500 Hb_001355_070 Hb_001355_070 Hb_001195_500--Hb_001355_070 Hb_001791_010 Hb_001791_010 Hb_001195_500--Hb_001791_010 Hb_001195_500--Hb_001148_040 Hb_004631_110 Hb_004631_110 Hb_001195_500--Hb_004631_110 Hb_001879_050 Hb_001879_050 Hb_002609_150--Hb_001879_050 Hb_000532_130 Hb_000532_130 Hb_002609_150--Hb_000532_130 Hb_000172_010 Hb_000172_010 Hb_002609_150--Hb_000172_010 Hb_002739_060 Hb_002739_060 Hb_002609_150--Hb_002739_060 Hb_008175_030--Hb_000778_020 Hb_008175_030--Hb_002739_060 Hb_005880_010 Hb_005880_010 Hb_008175_030--Hb_005880_010 Hb_001408_150 Hb_001408_150 Hb_008175_030--Hb_001408_150 Hb_057079_020 Hb_057079_020 Hb_008175_030--Hb_057079_020 Hb_008175_030--Hb_000532_130 Hb_000778_020--Hb_057079_020 Hb_002928_180 Hb_002928_180 Hb_000778_020--Hb_002928_180 Hb_010253_020 Hb_010253_020 Hb_000778_020--Hb_010253_020 Hb_000778_020--Hb_001408_150 Hb_000189_120 Hb_000189_120 Hb_000778_020--Hb_000189_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.26935 64.4064 11.43 26.078 5.7013 1.52837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.909372 0.19516 0.0496673 33.5786 7.64321

CAGE analysis