Hb_010381_110

Information

Type -
Description -
Location Contig10381: 97739-98320
Sequence    

Annotation

kegg
ID tcc:TCM_029017
description PRA1 family protein
nr
ID XP_007024460.1
description PRA1 family protein [Theobroma cacao]
swissprot
ID Q9C889
description PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1
trembl
ID A0A061GD60
description PRA1 family protein OS=Theobroma cacao GN=TCM_029017 PE=4 SV=1
Gene Ontology
ID GO:0004497
description pra1 family protein f2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01435: 97679-98491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010381_110 0.0 - - PRA1 family protein [Theobroma cacao]
2 Hb_064047_010 0.1189573625 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001148_040 0.1203074362 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
4 Hb_005695_020 0.1359132745 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
5 Hb_001259_100 0.136642165 - - chloride channel-like family protein [Populus trichocarpa]
6 Hb_004032_250 0.1372290006 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003371_260 0.1379617125 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
8 Hb_000111_190 0.1391882349 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
9 Hb_000907_120 0.1392733948 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
10 Hb_003579_040 0.1408690432 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
11 Hb_073171_010 0.1415199463 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
12 Hb_140848_010 0.1447911993 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
13 Hb_068332_010 0.1456924541 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_008406_020 0.1461442775 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
15 Hb_000429_110 0.1470361238 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
16 Hb_006364_020 0.1474644743 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
17 Hb_002276_100 0.148270242 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
18 Hb_003371_210 0.1510888524 - - unnamed protein product [Vitis vinifera]
19 Hb_017604_020 0.151601259 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
20 Hb_002053_090 0.1517767497 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010381_110 Hb_010381_110 Hb_064047_010 Hb_064047_010 Hb_010381_110--Hb_064047_010 Hb_001148_040 Hb_001148_040 Hb_010381_110--Hb_001148_040 Hb_005695_020 Hb_005695_020 Hb_010381_110--Hb_005695_020 Hb_001259_100 Hb_001259_100 Hb_010381_110--Hb_001259_100 Hb_004032_250 Hb_004032_250 Hb_010381_110--Hb_004032_250 Hb_003371_260 Hb_003371_260 Hb_010381_110--Hb_003371_260 Hb_000816_050 Hb_000816_050 Hb_064047_010--Hb_000816_050 Hb_005784_020 Hb_005784_020 Hb_064047_010--Hb_005784_020 Hb_002431_090 Hb_002431_090 Hb_064047_010--Hb_002431_090 Hb_002324_040 Hb_002324_040 Hb_064047_010--Hb_002324_040 Hb_000976_340 Hb_000976_340 Hb_064047_010--Hb_000976_340 Hb_000007_160 Hb_000007_160 Hb_001148_040--Hb_000007_160 Hb_140848_010 Hb_140848_010 Hb_001148_040--Hb_140848_010 Hb_008406_020 Hb_008406_020 Hb_001148_040--Hb_008406_020 Hb_002609_150 Hb_002609_150 Hb_001148_040--Hb_002609_150 Hb_000778_020 Hb_000778_020 Hb_001148_040--Hb_000778_020 Hb_001277_420 Hb_001277_420 Hb_005695_020--Hb_001277_420 Hb_002053_090 Hb_002053_090 Hb_005695_020--Hb_002053_090 Hb_005695_020--Hb_004032_250 Hb_000692_230 Hb_000692_230 Hb_005695_020--Hb_000692_230 Hb_005695_020--Hb_064047_010 Hb_073171_010 Hb_073171_010 Hb_001259_100--Hb_073171_010 Hb_052764_080 Hb_052764_080 Hb_001259_100--Hb_052764_080 Hb_005183_200 Hb_005183_200 Hb_001259_100--Hb_005183_200 Hb_000429_110 Hb_000429_110 Hb_001259_100--Hb_000429_110 Hb_004044_030 Hb_004044_030 Hb_001259_100--Hb_004044_030 Hb_002324_050 Hb_002324_050 Hb_004032_250--Hb_002324_050 Hb_001699_050 Hb_001699_050 Hb_004032_250--Hb_001699_050 Hb_004032_250--Hb_002324_040 Hb_004032_250--Hb_064047_010 Hb_004282_040 Hb_004282_040 Hb_004032_250--Hb_004282_040 Hb_003371_210 Hb_003371_210 Hb_003371_260--Hb_003371_210 Hb_066320_010 Hb_066320_010 Hb_003371_260--Hb_066320_010 Hb_000431_030 Hb_000431_030 Hb_003371_260--Hb_000431_030 Hb_002239_030 Hb_002239_030 Hb_003371_260--Hb_002239_030 Hb_014361_130 Hb_014361_130 Hb_003371_260--Hb_014361_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.388315 34.8189 5.32802 24.2413 0.750603 1.47285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.317077 0.0830597 1.30139 16.8927 4.31825

CAGE analysis