Hb_001277_420

Information

Type -
Description -
Location Contig1277: 406106-408546
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09260g
description POPTRDRAFT_769268; hypothetical protein
nr
ID XP_011030638.1
description PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FYH5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s09260g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08510: 406153-408417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_420 0.0 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
2 Hb_006550_010 0.1132294596 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
3 Hb_005695_020 0.1300165481 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
4 Hb_002894_040 0.1396236664 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000002_230 0.1422768365 - - RING/U-box superfamily protein [Theobroma cacao]
6 Hb_183209_020 0.1485605398 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
7 Hb_002053_090 0.1518900629 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007313_050 0.155735271 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
9 Hb_110854_010 0.1562729603 - - -
10 Hb_001934_010 0.1587843294 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_055531_010 0.1595481167 - - PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Pyrus x bretschneideri]
12 Hb_003939_090 0.1610466108 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_120117_010 0.1630929089 - - Disease resistance protein RFL1, putative [Ricinus communis]
14 Hb_038718_010 0.1652336723 - - Disease resistance protein RFL1, putative [Ricinus communis]
15 Hb_000692_030 0.1667936635 - - nucleoredoxin, putative [Ricinus communis]
16 Hb_000720_060 0.1676469206 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
17 Hb_106728_020 0.1696052936 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000032_340 0.1709712954 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
19 Hb_035006_010 0.1710391558 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
20 Hb_042491_010 0.1713142027 - - JHL06P13.14 [Jatropha curcas]

Gene co-expression network

sample Hb_001277_420 Hb_001277_420 Hb_006550_010 Hb_006550_010 Hb_001277_420--Hb_006550_010 Hb_005695_020 Hb_005695_020 Hb_001277_420--Hb_005695_020 Hb_002894_040 Hb_002894_040 Hb_001277_420--Hb_002894_040 Hb_000002_230 Hb_000002_230 Hb_001277_420--Hb_000002_230 Hb_183209_020 Hb_183209_020 Hb_001277_420--Hb_183209_020 Hb_002053_090 Hb_002053_090 Hb_001277_420--Hb_002053_090 Hb_007313_050 Hb_007313_050 Hb_006550_010--Hb_007313_050 Hb_035006_010 Hb_035006_010 Hb_006550_010--Hb_035006_010 Hb_024357_010 Hb_024357_010 Hb_006550_010--Hb_024357_010 Hb_055531_010 Hb_055531_010 Hb_006550_010--Hb_055531_010 Hb_021443_020 Hb_021443_020 Hb_006550_010--Hb_021443_020 Hb_005695_020--Hb_002053_090 Hb_010381_110 Hb_010381_110 Hb_005695_020--Hb_010381_110 Hb_004032_250 Hb_004032_250 Hb_005695_020--Hb_004032_250 Hb_000692_230 Hb_000692_230 Hb_005695_020--Hb_000692_230 Hb_064047_010 Hb_064047_010 Hb_005695_020--Hb_064047_010 Hb_007403_010 Hb_007403_010 Hb_002894_040--Hb_007403_010 Hb_010614_020 Hb_010614_020 Hb_002894_040--Hb_010614_020 Hb_002894_040--Hb_000002_230 Hb_008959_050 Hb_008959_050 Hb_002894_040--Hb_008959_050 Hb_002894_040--Hb_007313_050 Hb_004218_220 Hb_004218_220 Hb_002894_040--Hb_004218_220 Hb_000203_150 Hb_000203_150 Hb_000002_230--Hb_000203_150 Hb_179118_010 Hb_179118_010 Hb_000002_230--Hb_179118_010 Hb_000002_230--Hb_183209_020 Hb_004590_010 Hb_004590_010 Hb_000002_230--Hb_004590_010 Hb_183820_010 Hb_183820_010 Hb_000002_230--Hb_183820_010 Hb_050898_010 Hb_050898_010 Hb_183209_020--Hb_050898_010 Hb_103541_010 Hb_103541_010 Hb_183209_020--Hb_103541_010 Hb_189034_010 Hb_189034_010 Hb_183209_020--Hb_189034_010 Hb_000137_030 Hb_000137_030 Hb_183209_020--Hb_000137_030 Hb_183209_020--Hb_000203_150 Hb_002053_090--Hb_050898_010 Hb_002053_090--Hb_000002_230 Hb_000316_080 Hb_000316_080 Hb_002053_090--Hb_000316_080 Hb_140848_010 Hb_140848_010 Hb_002053_090--Hb_140848_010 Hb_000720_060 Hb_000720_060 Hb_002053_090--Hb_000720_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0591679 18.7097 5.37963 26.8035 0.229369 0.850371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.487668 0.426144 0.390756 9.91868 1.04198

CAGE analysis