Hb_024357_010

Information

Type -
Description -
Location Contig24357: 644-1303
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012072753.1
description PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LDA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00277 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rga1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25449: 786-897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024357_010 0.0 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
2 Hb_001897_030 0.1108311171 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
3 Hb_005389_090 0.1225088063 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
4 Hb_002239_030 0.1287186 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
5 Hb_132517_010 0.1300451522 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
6 Hb_133508_010 0.1339469801 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
7 Hb_000723_060 0.1383127369 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
8 Hb_087468_010 0.1419133216 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
9 Hb_003800_010 0.1442947714 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
10 Hb_000252_190 0.1486448286 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
11 Hb_003864_020 0.1503986547 - - kinase, putative [Ricinus communis]
12 Hb_006573_060 0.1515932729 - - hypothetical protein [Bruguiera gymnorhiza]
13 Hb_024857_010 0.1521151702 - - glutaredoxin 2.1 [Hevea brasiliensis]
14 Hb_000991_110 0.152135976 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
15 Hb_005396_110 0.157108708 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012760_060 0.1581552015 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
17 Hb_003602_090 0.1584194741 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
18 Hb_006550_010 0.1599984584 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
19 Hb_004586_230 0.160991171 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000509_040 0.161194287 - - hypothetical protein VITISV_009716 [Vitis vinifera]

Gene co-expression network

sample Hb_024357_010 Hb_024357_010 Hb_001897_030 Hb_001897_030 Hb_024357_010--Hb_001897_030 Hb_005389_090 Hb_005389_090 Hb_024357_010--Hb_005389_090 Hb_002239_030 Hb_002239_030 Hb_024357_010--Hb_002239_030 Hb_132517_010 Hb_132517_010 Hb_024357_010--Hb_132517_010 Hb_133508_010 Hb_133508_010 Hb_024357_010--Hb_133508_010 Hb_000723_060 Hb_000723_060 Hb_024357_010--Hb_000723_060 Hb_001897_030--Hb_005389_090 Hb_001897_030--Hb_132517_010 Hb_000991_110 Hb_000991_110 Hb_001897_030--Hb_000991_110 Hb_000509_040 Hb_000509_040 Hb_001897_030--Hb_000509_040 Hb_005396_110 Hb_005396_110 Hb_001897_030--Hb_005396_110 Hb_087468_010 Hb_087468_010 Hb_001897_030--Hb_087468_010 Hb_005389_090--Hb_132517_010 Hb_006573_060 Hb_006573_060 Hb_005389_090--Hb_006573_060 Hb_005389_090--Hb_000991_110 Hb_007313_050 Hb_007313_050 Hb_005389_090--Hb_007313_050 Hb_005389_090--Hb_005396_110 Hb_000101_140 Hb_000101_140 Hb_002239_030--Hb_000101_140 Hb_002239_030--Hb_000723_060 Hb_002248_090 Hb_002248_090 Hb_002239_030--Hb_002248_090 Hb_024857_010 Hb_024857_010 Hb_002239_030--Hb_024857_010 Hb_000656_370 Hb_000656_370 Hb_002239_030--Hb_000656_370 Hb_060237_010 Hb_060237_010 Hb_002239_030--Hb_060237_010 Hb_132517_010--Hb_005396_110 Hb_001059_050 Hb_001059_050 Hb_132517_010--Hb_001059_050 Hb_151616_010 Hb_151616_010 Hb_132517_010--Hb_151616_010 Hb_001227_010 Hb_001227_010 Hb_132517_010--Hb_001227_010 Hb_127400_010 Hb_127400_010 Hb_133508_010--Hb_127400_010 Hb_133508_010--Hb_002239_030 Hb_133508_010--Hb_024857_010 Hb_007137_030 Hb_007137_030 Hb_133508_010--Hb_007137_030 Hb_006911_060 Hb_006911_060 Hb_133508_010--Hb_006911_060 Hb_006615_180 Hb_006615_180 Hb_000723_060--Hb_006615_180 Hb_000723_060--Hb_000101_140 Hb_003602_090 Hb_003602_090 Hb_000723_060--Hb_003602_090 Hb_000137_030 Hb_000137_030 Hb_000723_060--Hb_000137_030 Hb_000723_060--Hb_000656_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113967 10.6895 1.54398 6.69259 0.359183 0.0519742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0878946 0.138181 0 1.57852 0.27121

CAGE analysis