Hb_007137_030

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig7137: 48894-53500
Sequence    

Annotation

kegg
ID rcu:RCOM_0602390
description zinc finger protein, putative
nr
ID XP_012079164.1
description PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
swissprot
ID Q9LSL6
description Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1
trembl
ID A0A067KJ60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12335 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55395: 49954-50137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007137_030 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
2 Hb_001608_030 0.1048124221 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
3 Hb_093177_010 0.1273274256 - - Phosphoprotein phosphatase [Theobroma cacao]
4 Hb_042553_010 0.1383438801 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
5 Hb_133508_010 0.1588010809 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
6 Hb_102100_010 0.161369414 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_115158_010 0.1615007852 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_006911_060 0.1655157667 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
9 Hb_000659_020 0.1671858876 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
10 Hb_004106_010 0.1753065733 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
11 Hb_116635_010 0.179586886 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_138575_010 0.1797627151 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_001504_270 0.1822674193 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
14 Hb_001248_110 0.1826886132 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
15 Hb_056012_010 0.1853659664 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
16 Hb_158696_010 0.189023417 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
17 Hb_012760_060 0.1929043176 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
18 Hb_007951_120 0.1930357268 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
19 Hb_000699_190 0.194545342 - - unknown [Populus trichocarpa]
20 Hb_000431_030 0.1986557058 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_007137_030 Hb_007137_030 Hb_001608_030 Hb_001608_030 Hb_007137_030--Hb_001608_030 Hb_093177_010 Hb_093177_010 Hb_007137_030--Hb_093177_010 Hb_042553_010 Hb_042553_010 Hb_007137_030--Hb_042553_010 Hb_133508_010 Hb_133508_010 Hb_007137_030--Hb_133508_010 Hb_102100_010 Hb_102100_010 Hb_007137_030--Hb_102100_010 Hb_115158_010 Hb_115158_010 Hb_007137_030--Hb_115158_010 Hb_001608_030--Hb_093177_010 Hb_158696_010 Hb_158696_010 Hb_001608_030--Hb_158696_010 Hb_010080_020 Hb_010080_020 Hb_001608_030--Hb_010080_020 Hb_000007_160 Hb_000007_160 Hb_001608_030--Hb_000007_160 Hb_000984_100 Hb_000984_100 Hb_001608_030--Hb_000984_100 Hb_004106_010 Hb_004106_010 Hb_093177_010--Hb_004106_010 Hb_093177_010--Hb_158696_010 Hb_093177_010--Hb_115158_010 Hb_001662_170 Hb_001662_170 Hb_093177_010--Hb_001662_170 Hb_001248_110 Hb_001248_110 Hb_042553_010--Hb_001248_110 Hb_042553_010--Hb_001608_030 Hb_116635_010 Hb_116635_010 Hb_042553_010--Hb_116635_010 Hb_006911_060 Hb_006911_060 Hb_042553_010--Hb_006911_060 Hb_183539_010 Hb_183539_010 Hb_042553_010--Hb_183539_010 Hb_024357_010 Hb_024357_010 Hb_133508_010--Hb_024357_010 Hb_127400_010 Hb_127400_010 Hb_133508_010--Hb_127400_010 Hb_002239_030 Hb_002239_030 Hb_133508_010--Hb_002239_030 Hb_024857_010 Hb_024857_010 Hb_133508_010--Hb_024857_010 Hb_133508_010--Hb_006911_060 Hb_056012_010 Hb_056012_010 Hb_102100_010--Hb_056012_010 Hb_000015_180 Hb_000015_180 Hb_102100_010--Hb_000015_180 Hb_007951_120 Hb_007951_120 Hb_102100_010--Hb_007951_120 Hb_000220_090 Hb_000220_090 Hb_102100_010--Hb_000220_090 Hb_016404_010 Hb_016404_010 Hb_102100_010--Hb_016404_010 Hb_138575_010 Hb_138575_010 Hb_102100_010--Hb_138575_010 Hb_115158_010--Hb_001608_030 Hb_012760_060 Hb_012760_060 Hb_115158_010--Hb_012760_060 Hb_115158_010--Hb_004106_010 Hb_000236_120 Hb_000236_120 Hb_115158_010--Hb_000236_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24554 75.7371 9.6333 22.4322 9.92095 4.58319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0346607 0.0818013 0.255213 11.4104 3.35222

CAGE analysis