Hb_000236_120

Information

Type -
Description -
Location Contig236: 124706-124915
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_120 0.0 - - -
2 Hb_001699_050 0.1418918276 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
3 Hb_003602_090 0.149772939 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
4 Hb_004032_250 0.1504540328 - - conserved hypothetical protein [Ricinus communis]
5 Hb_019040_010 0.1523636476 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
6 Hb_002739_070 0.1557157077 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
7 Hb_017604_020 0.1588201527 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
8 Hb_000007_160 0.1615290575 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
9 Hb_064047_010 0.1662274944 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000808_160 0.1666858478 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
11 Hb_032050_070 0.1670637707 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
12 Hb_001071_060 0.1674430896 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
13 Hb_082870_010 0.1694405634 - - Disease resistance protein RFL1, putative [Ricinus communis]
14 Hb_006615_180 0.1696472948 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
15 Hb_001608_030 0.1705229435 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
16 Hb_000069_430 0.1706351474 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
17 Hb_093177_010 0.1717935994 - - Phosphoprotein phosphatase [Theobroma cacao]
18 Hb_009510_050 0.1721847498 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000995_010 0.17354471 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
20 Hb_001195_500 0.1739600989 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000236_120 Hb_000236_120 Hb_001699_050 Hb_001699_050 Hb_000236_120--Hb_001699_050 Hb_003602_090 Hb_003602_090 Hb_000236_120--Hb_003602_090 Hb_004032_250 Hb_004032_250 Hb_000236_120--Hb_004032_250 Hb_019040_010 Hb_019040_010 Hb_000236_120--Hb_019040_010 Hb_002739_070 Hb_002739_070 Hb_000236_120--Hb_002739_070 Hb_017604_020 Hb_017604_020 Hb_000236_120--Hb_017604_020 Hb_001699_050--Hb_017604_020 Hb_001699_050--Hb_004032_250 Hb_000007_160 Hb_000007_160 Hb_001699_050--Hb_000007_160 Hb_000808_160 Hb_000808_160 Hb_001699_050--Hb_000808_160 Hb_009510_050 Hb_009510_050 Hb_001699_050--Hb_009510_050 Hb_002324_050 Hb_002324_050 Hb_001699_050--Hb_002324_050 Hb_003602_090--Hb_009510_050 Hb_006615_180 Hb_006615_180 Hb_003602_090--Hb_006615_180 Hb_000723_060 Hb_000723_060 Hb_003602_090--Hb_000723_060 Hb_082870_010 Hb_082870_010 Hb_003602_090--Hb_082870_010 Hb_117127_010 Hb_117127_010 Hb_003602_090--Hb_117127_010 Hb_003602_090--Hb_019040_010 Hb_004032_250--Hb_002324_050 Hb_002324_040 Hb_002324_040 Hb_004032_250--Hb_002324_040 Hb_064047_010 Hb_064047_010 Hb_004032_250--Hb_064047_010 Hb_004282_040 Hb_004282_040 Hb_004032_250--Hb_004282_040 Hb_010381_110 Hb_010381_110 Hb_004032_250--Hb_010381_110 Hb_019040_010--Hb_009510_050 Hb_019040_010--Hb_006615_180 Hb_019040_010--Hb_082870_010 Hb_000771_030 Hb_000771_030 Hb_019040_010--Hb_000771_030 Hb_019040_010--Hb_017604_020 Hb_002475_130 Hb_002475_130 Hb_002739_070--Hb_002475_130 Hb_015882_020 Hb_015882_020 Hb_002739_070--Hb_015882_020 Hb_062229_010 Hb_062229_010 Hb_002739_070--Hb_062229_010 Hb_000522_130 Hb_000522_130 Hb_002739_070--Hb_000522_130 Hb_001921_010 Hb_001921_010 Hb_002739_070--Hb_001921_010 Hb_006618_020 Hb_006618_020 Hb_002739_070--Hb_006618_020 Hb_002276_100 Hb_002276_100 Hb_017604_020--Hb_002276_100 Hb_017604_020--Hb_000808_160 Hb_003556_070 Hb_003556_070 Hb_017604_020--Hb_003556_070 Hb_004544_090 Hb_004544_090 Hb_017604_020--Hb_004544_090 Hb_017604_020--Hb_009510_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4282 88.4485 20.2156 48.25 4.42355 1.50095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 23.1139 14.4029

CAGE analysis