Hb_102100_010

Information

Type -
Description -
Location Contig102100: 1-9021
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID O64973
description Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01003: 5464-8825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102100_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_056012_010 0.1148852971 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
3 Hb_000015_180 0.1239001724 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
4 Hb_007951_120 0.1267708252 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
5 Hb_000220_090 0.1301596904 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
6 Hb_016404_010 0.1321657643 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_138575_010 0.1341830748 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
8 Hb_010589_130 0.1389726035 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
9 Hb_181824_010 0.1420143968 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_000960_010 0.147759829 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_001504_270 0.1488466046 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
12 Hb_033149_020 0.1498177276 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
13 Hb_000103_400 0.1515253422 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
14 Hb_005568_060 0.1529243914 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
15 Hb_000434_050 0.1551589334 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
16 Hb_006414_020 0.1568415085 transcription factor TF Family: MYB -
17 Hb_000803_060 0.1611351836 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
18 Hb_007137_030 0.161369414 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
19 Hb_000506_140 0.1646134632 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
20 Hb_003038_010 0.1653680009 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_102100_010 Hb_102100_010 Hb_056012_010 Hb_056012_010 Hb_102100_010--Hb_056012_010 Hb_000015_180 Hb_000015_180 Hb_102100_010--Hb_000015_180 Hb_007951_120 Hb_007951_120 Hb_102100_010--Hb_007951_120 Hb_000220_090 Hb_000220_090 Hb_102100_010--Hb_000220_090 Hb_016404_010 Hb_016404_010 Hb_102100_010--Hb_016404_010 Hb_138575_010 Hb_138575_010 Hb_102100_010--Hb_138575_010 Hb_000803_060 Hb_000803_060 Hb_056012_010--Hb_000803_060 Hb_056012_010--Hb_000220_090 Hb_001258_150 Hb_001258_150 Hb_056012_010--Hb_001258_150 Hb_185513_010 Hb_185513_010 Hb_056012_010--Hb_185513_010 Hb_001662_170 Hb_001662_170 Hb_056012_010--Hb_001662_170 Hb_000015_180--Hb_000220_090 Hb_002835_260 Hb_002835_260 Hb_000015_180--Hb_002835_260 Hb_000434_050 Hb_000434_050 Hb_000015_180--Hb_000434_050 Hb_003038_010 Hb_003038_010 Hb_000015_180--Hb_003038_010 Hb_011120_020 Hb_011120_020 Hb_000015_180--Hb_011120_020 Hb_181824_010 Hb_181824_010 Hb_007951_120--Hb_181824_010 Hb_033149_020 Hb_033149_020 Hb_007951_120--Hb_033149_020 Hb_007951_120--Hb_056012_010 Hb_006414_020 Hb_006414_020 Hb_007951_120--Hb_006414_020 Hb_003216_050 Hb_003216_050 Hb_007951_120--Hb_003216_050 Hb_000220_090--Hb_003038_010 Hb_000220_090--Hb_000803_060 Hb_000220_090--Hb_000434_050 Hb_136027_010 Hb_136027_010 Hb_016404_010--Hb_136027_010 Hb_000506_140 Hb_000506_140 Hb_016404_010--Hb_000506_140 Hb_005568_060 Hb_005568_060 Hb_016404_010--Hb_005568_060 Hb_000796_200 Hb_000796_200 Hb_016404_010--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_016404_010--Hb_002311_490 Hb_000465_330 Hb_000465_330 Hb_016404_010--Hb_000465_330 Hb_048653_020 Hb_048653_020 Hb_138575_010--Hb_048653_020 Hb_009897_020 Hb_009897_020 Hb_138575_010--Hb_009897_020 Hb_116635_010 Hb_116635_010 Hb_138575_010--Hb_116635_010 Hb_138575_010--Hb_000015_180 Hb_001504_270 Hb_001504_270 Hb_138575_010--Hb_001504_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48397 39.4051 6.03905 6.48385 2.55081 1.62322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.290062 0.237397 1.01625 2.47074 1.19247

CAGE analysis