Hb_011120_020

Information

Type -
Description -
Location Contig11120: 17705-24221
Sequence    

Annotation

kegg
ID rcu:RCOM_1314170
description hypothetical protein
nr
ID XP_012077412.1
description PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07760 PE=3 SV=1
Gene Ontology
ID GO:0016301
description casein kinase i-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011120_020 0.0 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
2 Hb_000015_180 0.1312567093 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
3 Hb_000003_430 0.1421771853 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_011416_020 0.1429386122 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002835_260 0.1431454721 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
6 Hb_002918_150 0.1525245757 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
7 Hb_000220_090 0.16915423 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
8 Hb_136886_010 0.1781019398 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_001956_190 0.1784488212 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
10 Hb_003053_060 0.1802318626 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
11 Hb_000270_770 0.1804701297 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
12 Hb_138575_010 0.181726265 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_000142_010 0.1863065493 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
14 Hb_015978_030 0.193357067 - - Zinc finger protein GIS2 [Medicago truncatula]
15 Hb_000960_010 0.1947824845 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_127819_010 0.1995829976 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_048653_020 0.1996056874 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_185513_010 0.1998405586 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003038_010 0.20509267 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_187697_010 0.2088840058 - - TMV resistance protein N, putative [Ricinus communis]

Gene co-expression network

sample Hb_011120_020 Hb_011120_020 Hb_000015_180 Hb_000015_180 Hb_011120_020--Hb_000015_180 Hb_000003_430 Hb_000003_430 Hb_011120_020--Hb_000003_430 Hb_011416_020 Hb_011416_020 Hb_011120_020--Hb_011416_020 Hb_002835_260 Hb_002835_260 Hb_011120_020--Hb_002835_260 Hb_002918_150 Hb_002918_150 Hb_011120_020--Hb_002918_150 Hb_000220_090 Hb_000220_090 Hb_011120_020--Hb_000220_090 Hb_000015_180--Hb_000220_090 Hb_000015_180--Hb_002835_260 Hb_000434_050 Hb_000434_050 Hb_000015_180--Hb_000434_050 Hb_102100_010 Hb_102100_010 Hb_000015_180--Hb_102100_010 Hb_003038_010 Hb_003038_010 Hb_000015_180--Hb_003038_010 Hb_111881_030 Hb_111881_030 Hb_000003_430--Hb_111881_030 Hb_001956_190 Hb_001956_190 Hb_000003_430--Hb_001956_190 Hb_000270_770 Hb_000270_770 Hb_000003_430--Hb_000270_770 Hb_187697_010 Hb_187697_010 Hb_000003_430--Hb_187697_010 Hb_000003_430--Hb_011416_020 Hb_011416_020--Hb_002835_260 Hb_000142_010 Hb_000142_010 Hb_011416_020--Hb_000142_010 Hb_011416_020--Hb_001956_190 Hb_000506_130 Hb_000506_130 Hb_011416_020--Hb_000506_130 Hb_002835_260--Hb_000220_090 Hb_002835_260--Hb_000434_050 Hb_136886_010 Hb_136886_010 Hb_002835_260--Hb_136886_010 Hb_048653_020 Hb_048653_020 Hb_002918_150--Hb_048653_020 Hb_000809_080 Hb_000809_080 Hb_002918_150--Hb_000809_080 Hb_002918_150--Hb_000220_090 Hb_138575_010 Hb_138575_010 Hb_002918_150--Hb_138575_010 Hb_009838_060 Hb_009838_060 Hb_002918_150--Hb_009838_060 Hb_000220_090--Hb_003038_010 Hb_056012_010 Hb_056012_010 Hb_000220_090--Hb_056012_010 Hb_000803_060 Hb_000803_060 Hb_000220_090--Hb_000803_060 Hb_000220_090--Hb_102100_010 Hb_000220_090--Hb_000434_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.92528 59.1385 2.77049 13.3058 3.44978 2.64174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50331 5.25932 1.19923 2.73926 0.16659

CAGE analysis