Hb_009838_060

Information

Type -
Description -
Location Contig9838: 19352-21524
Sequence    

Annotation

kegg
ID rcu:RCOM_1217400
description hypothetical protein
nr
ID XP_002528353.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQT4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1217400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64516: 19657-21280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003494_060 0.1197518932 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
3 Hb_001141_360 0.1315918754 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
4 Hb_012760_010 0.1357921269 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
5 Hb_005656_140 0.1359490144 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
6 Hb_001546_110 0.1480563201 - - PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]
7 Hb_185513_010 0.148098349 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003038_010 0.1510028273 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_001863_150 0.1545119426 - - VQ motif-containing family protein [Populus trichocarpa]
10 Hb_000062_080 0.1577456289 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
11 Hb_002235_240 0.1594188116 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
12 Hb_012725_040 0.1617499546 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
13 Hb_001865_060 0.1643055171 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
14 Hb_000634_070 0.1649201237 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
15 Hb_002918_150 0.1657423417 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
16 Hb_000483_040 0.16798988 - - Cell division protein ftsH, putative [Ricinus communis]
17 Hb_002760_040 0.1689397488 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
18 Hb_009897_020 0.1708765118 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_129204_060 0.1726091246 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
20 Hb_003120_050 0.1727358092 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]

Gene co-expression network

sample Hb_009838_060 Hb_009838_060 Hb_003494_060 Hb_003494_060 Hb_009838_060--Hb_003494_060 Hb_001141_360 Hb_001141_360 Hb_009838_060--Hb_001141_360 Hb_012760_010 Hb_012760_010 Hb_009838_060--Hb_012760_010 Hb_005656_140 Hb_005656_140 Hb_009838_060--Hb_005656_140 Hb_001546_110 Hb_001546_110 Hb_009838_060--Hb_001546_110 Hb_185513_010 Hb_185513_010 Hb_009838_060--Hb_185513_010 Hb_003494_060--Hb_001141_360 Hb_001865_060 Hb_001865_060 Hb_003494_060--Hb_001865_060 Hb_012725_040 Hb_012725_040 Hb_003494_060--Hb_012725_040 Hb_000483_040 Hb_000483_040 Hb_003494_060--Hb_000483_040 Hb_000062_080 Hb_000062_080 Hb_003494_060--Hb_000062_080 Hb_001141_360--Hb_001865_060 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010 Hb_012760_010--Hb_000483_040 Hb_012760_010--Hb_001546_110 Hb_003078_050 Hb_003078_050 Hb_012760_010--Hb_003078_050 Hb_000069_230 Hb_000069_230 Hb_012760_010--Hb_000069_230 Hb_012760_010--Hb_003494_060 Hb_005656_140--Hb_003494_060 Hb_002760_040 Hb_002760_040 Hb_005656_140--Hb_002760_040 Hb_129204_060 Hb_129204_060 Hb_005656_140--Hb_129204_060 Hb_005656_140--Hb_001141_360 Hb_002235_240 Hb_002235_240 Hb_005656_140--Hb_002235_240 Hb_001546_110--Hb_003120_050 Hb_001546_110--Hb_003494_060 Hb_003038_010 Hb_003038_010 Hb_001546_110--Hb_003038_010 Hb_001546_110--Hb_001141_360 Hb_185513_010--Hb_012725_040 Hb_003637_020 Hb_003637_020 Hb_185513_010--Hb_003637_020 Hb_103788_010 Hb_103788_010 Hb_185513_010--Hb_103788_010 Hb_056012_010 Hb_056012_010 Hb_185513_010--Hb_056012_010 Hb_000117_060 Hb_000117_060 Hb_185513_010--Hb_000117_060 Hb_185513_010--Hb_001865_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2817 28.8898 2.62473 4.04256 1.82117 3.7282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8207 3.4728 3.11401 3.08936 0.810421

CAGE analysis