Hb_129204_060

Information

Type transcription factor
Description TF Family: C3H
Location Contig129204: 51215-52378
Sequence    

Annotation

kegg
ID pmum:103340786
description zinc finger CCCH domain-containing protein 20-like
nr
ID XP_012076821.1
description PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
swissprot
ID O82199
description Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1
trembl
ID A0A067KPP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07335 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08823: 50727-52418
cDNA
(Sanger)
(ID:Location)		 015_H09.ab1: 51812-52418

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_129204_060 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
2 Hb_002235_240 0.084129084 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
3 Hb_000215_410 0.1167512881 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
4 Hb_000836_120 0.1250704694 - - syntaxin, putative [Ricinus communis]
5 Hb_002273_050 0.1395211895 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
6 Hb_005656_140 0.1414263744 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
7 Hb_002686_280 0.1537647449 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_003849_260 0.1547208185 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
9 Hb_002273_080 0.1560637 - - geranylgeranyl reductase [Monoraphidium neglectum]
10 Hb_001863_150 0.1669093701 - - VQ motif-containing family protein [Populus trichocarpa]
11 Hb_009838_060 0.1726091246 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001141_360 0.1820304459 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
13 Hb_131956_010 0.1863546148 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
14 Hb_004724_130 0.187357743 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
15 Hb_004108_170 0.1900902135 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005400_040 0.1904873011 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
17 Hb_000567_080 0.191672782 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
18 Hb_164945_040 0.1929296931 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
19 Hb_000976_290 0.1958250999 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
20 Hb_000997_110 0.1972853587 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]

Gene co-expression network

sample Hb_129204_060 Hb_129204_060 Hb_002235_240 Hb_002235_240 Hb_129204_060--Hb_002235_240 Hb_000215_410 Hb_000215_410 Hb_129204_060--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_129204_060--Hb_000836_120 Hb_002273_050 Hb_002273_050 Hb_129204_060--Hb_002273_050 Hb_005656_140 Hb_005656_140 Hb_129204_060--Hb_005656_140 Hb_002686_280 Hb_002686_280 Hb_129204_060--Hb_002686_280 Hb_002235_240--Hb_000836_120 Hb_003849_260 Hb_003849_260 Hb_002235_240--Hb_003849_260 Hb_002235_240--Hb_000215_410 Hb_001141_360 Hb_001141_360 Hb_002235_240--Hb_001141_360 Hb_001863_150 Hb_001863_150 Hb_002235_240--Hb_001863_150 Hb_000215_410--Hb_002273_050 Hb_002273_080 Hb_002273_080 Hb_000215_410--Hb_002273_080 Hb_000215_410--Hb_000836_120 Hb_001269_690 Hb_001269_690 Hb_000215_410--Hb_001269_690 Hb_000836_120--Hb_002273_050 Hb_000836_120--Hb_003849_260 Hb_001638_040 Hb_001638_040 Hb_000836_120--Hb_001638_040 Hb_002273_050--Hb_002273_080 Hb_002273_050--Hb_001269_690 Hb_002273_050--Hb_002686_280 Hb_003494_060 Hb_003494_060 Hb_005656_140--Hb_003494_060 Hb_002760_040 Hb_002760_040 Hb_005656_140--Hb_002760_040 Hb_009838_060 Hb_009838_060 Hb_005656_140--Hb_009838_060 Hb_005656_140--Hb_001141_360 Hb_005656_140--Hb_002235_240 Hb_002686_280--Hb_002273_080 Hb_002686_280--Hb_002235_240 Hb_001269_040 Hb_001269_040 Hb_002686_280--Hb_001269_040 Hb_042175_010 Hb_042175_010 Hb_002686_280--Hb_042175_010 Hb_002686_280--Hb_003849_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.3278 371.318 14.932 26.5804 33.3929 62.4547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.7695 30.5851 41.7438 101.377 3.48763

CAGE analysis