Hb_000836_120

Information

Type -
Description -
Location Contig836: 118061-121521
Sequence    

Annotation

kegg
ID rcu:RCOM_1616160
description syntaxin, putative
nr
ID XP_002511890.1
description syntaxin, putative [Ricinus communis]
swissprot
ID Q9SF29
description Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1
trembl
ID B9RDV1
description Syntaxin, putative OS=Ricinus communis GN=RCOM_1616160 PE=4 SV=1
Gene Ontology
ID GO:0005783
description syntaxin of plants 71

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59920: 119108-119430 , PASA_asmbl_59921: 119431-121593 , PASA_asmbl_59922: 120294-121741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_120 0.0 - - syntaxin, putative [Ricinus communis]
2 Hb_002273_050 0.1153202979 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
3 Hb_002235_240 0.1169057477 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
4 Hb_129204_060 0.1250704694 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
5 Hb_003849_260 0.1324261761 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
6 Hb_000215_410 0.1384527333 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
7 Hb_001638_040 0.1453169092 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
8 Hb_164945_040 0.1516597853 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
9 Hb_000261_190 0.1529792935 - - PREDICTED: uncharacterized protein At4g04980-like [Jatropha curcas]
10 Hb_000853_030 0.1541808258 - - sucrose synthase 2 [Hevea brasiliensis]
11 Hb_001225_090 0.1612435041 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
12 Hb_002686_280 0.1625708439 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_000243_380 0.1685259022 - - PREDICTED: histone H1 [Jatropha curcas]
14 Hb_002273_080 0.1695339127 - - geranylgeranyl reductase [Monoraphidium neglectum]
15 Hb_005656_140 0.1705145129 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
16 Hb_001269_690 0.1710825334 - - conserved hypothetical protein [Ricinus communis]
17 Hb_164010_070 0.1742707575 - - Paramyosin, putative [Ricinus communis]
18 Hb_003376_310 0.1811427327 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
19 Hb_000390_100 0.1821931548 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
20 Hb_002609_090 0.1831508362 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_120 Hb_000836_120 Hb_002273_050 Hb_002273_050 Hb_000836_120--Hb_002273_050 Hb_002235_240 Hb_002235_240 Hb_000836_120--Hb_002235_240 Hb_129204_060 Hb_129204_060 Hb_000836_120--Hb_129204_060 Hb_003849_260 Hb_003849_260 Hb_000836_120--Hb_003849_260 Hb_000215_410 Hb_000215_410 Hb_000836_120--Hb_000215_410 Hb_001638_040 Hb_001638_040 Hb_000836_120--Hb_001638_040 Hb_002273_080 Hb_002273_080 Hb_002273_050--Hb_002273_080 Hb_002273_050--Hb_000215_410 Hb_001269_690 Hb_001269_690 Hb_002273_050--Hb_001269_690 Hb_002686_280 Hb_002686_280 Hb_002273_050--Hb_002686_280 Hb_002273_050--Hb_129204_060 Hb_002235_240--Hb_129204_060 Hb_002235_240--Hb_003849_260 Hb_002235_240--Hb_000215_410 Hb_001141_360 Hb_001141_360 Hb_002235_240--Hb_001141_360 Hb_001863_150 Hb_001863_150 Hb_002235_240--Hb_001863_150 Hb_129204_060--Hb_000215_410 Hb_005656_140 Hb_005656_140 Hb_129204_060--Hb_005656_140 Hb_129204_060--Hb_002686_280 Hb_003849_260--Hb_001141_360 Hb_004800_190 Hb_004800_190 Hb_003849_260--Hb_004800_190 Hb_001584_220 Hb_001584_220 Hb_003849_260--Hb_001584_220 Hb_003849_260--Hb_002686_280 Hb_000215_410--Hb_002273_080 Hb_000215_410--Hb_001269_690 Hb_010831_020 Hb_010831_020 Hb_001638_040--Hb_010831_020 Hb_000540_120 Hb_000540_120 Hb_001638_040--Hb_000540_120 Hb_000449_050 Hb_000449_050 Hb_001638_040--Hb_000449_050 Hb_164010_070 Hb_164010_070 Hb_001638_040--Hb_164010_070 Hb_000853_030 Hb_000853_030 Hb_001638_040--Hb_000853_030 Hb_002739_150 Hb_002739_150 Hb_001638_040--Hb_002739_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.05693 15.4329 0.207052 1.40168 3.31815 3.39071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.44691 2.2216 1.45973 4.37146 0.386388

CAGE analysis