Hb_002235_240

Information

Type -
Description -
Location Contig2235: 163703-167240
Sequence    

Annotation

kegg
ID rcu:RCOM_0537530
description xenotropic and polytropic murine leukemia virus receptor ids-4, putative
nr
ID XP_002530001.1
description xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
swissprot
ID Q94A21
description SPX domain-containing protein 4 OS=Arabidopsis thaliana GN=SPX4 PE=2 SV=1
trembl
ID B9SVI2
description Xenotropic and polytropic murine leukemia virus receptor ids-4, putative OS=Ricinus communis GN=RCOM_0537530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_240 0.0 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
2 Hb_129204_060 0.084129084 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
3 Hb_000836_120 0.1169057477 - - syntaxin, putative [Ricinus communis]
4 Hb_003849_260 0.1195266308 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
5 Hb_000215_410 0.1353019552 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
6 Hb_001141_360 0.1384344211 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
7 Hb_001863_150 0.1390113241 - - VQ motif-containing family protein [Populus trichocarpa]
8 Hb_002686_280 0.1408177959 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_002273_050 0.1471753073 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
10 Hb_001225_090 0.1481354771 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
11 Hb_005656_140 0.1492785832 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
12 Hb_004724_130 0.1533549461 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
13 Hb_009838_060 0.1594188116 - - conserved hypothetical protein [Ricinus communis]
14 Hb_042175_010 0.1602411001 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
15 Hb_000175_500 0.1656425655 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
16 Hb_002273_080 0.1686632186 - - geranylgeranyl reductase [Monoraphidium neglectum]
17 Hb_131956_010 0.1700605481 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
18 Hb_012226_010 0.172078797 - - PREDICTED: protein DGCR14 [Jatropha curcas]
19 Hb_000976_290 0.1745786829 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
20 Hb_000243_380 0.1787582232 - - PREDICTED: histone H1 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_240 Hb_002235_240 Hb_129204_060 Hb_129204_060 Hb_002235_240--Hb_129204_060 Hb_000836_120 Hb_000836_120 Hb_002235_240--Hb_000836_120 Hb_003849_260 Hb_003849_260 Hb_002235_240--Hb_003849_260 Hb_000215_410 Hb_000215_410 Hb_002235_240--Hb_000215_410 Hb_001141_360 Hb_001141_360 Hb_002235_240--Hb_001141_360 Hb_001863_150 Hb_001863_150 Hb_002235_240--Hb_001863_150 Hb_129204_060--Hb_000215_410 Hb_129204_060--Hb_000836_120 Hb_002273_050 Hb_002273_050 Hb_129204_060--Hb_002273_050 Hb_005656_140 Hb_005656_140 Hb_129204_060--Hb_005656_140 Hb_002686_280 Hb_002686_280 Hb_129204_060--Hb_002686_280 Hb_000836_120--Hb_002273_050 Hb_000836_120--Hb_003849_260 Hb_000836_120--Hb_000215_410 Hb_001638_040 Hb_001638_040 Hb_000836_120--Hb_001638_040 Hb_003849_260--Hb_001141_360 Hb_004800_190 Hb_004800_190 Hb_003849_260--Hb_004800_190 Hb_001584_220 Hb_001584_220 Hb_003849_260--Hb_001584_220 Hb_003849_260--Hb_002686_280 Hb_000215_410--Hb_002273_050 Hb_002273_080 Hb_002273_080 Hb_000215_410--Hb_002273_080 Hb_001269_690 Hb_001269_690 Hb_000215_410--Hb_001269_690 Hb_001865_060 Hb_001865_060 Hb_001141_360--Hb_001865_060 Hb_003494_060 Hb_003494_060 Hb_001141_360--Hb_003494_060 Hb_000062_080 Hb_000062_080 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_012725_040 Hb_012725_040 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010 Hb_001863_150--Hb_001141_360 Hb_005400_040 Hb_005400_040 Hb_001863_150--Hb_005400_040 Hb_004724_130 Hb_004724_130 Hb_001863_150--Hb_004724_130 Hb_042175_010 Hb_042175_010 Hb_001863_150--Hb_042175_010 Hb_009838_060 Hb_009838_060 Hb_001863_150--Hb_009838_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9801 49.033 3.17133 2.78757 6.71383 8.85567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.54056 5.64522 4.79334 11.6238 1.09751

CAGE analysis