Hb_001269_690

Information

Type -
Description -
Location Contig1269: 685070-691121
Sequence    

Annotation

kegg
ID rcu:RCOM_1442470
description hypothetical protein
nr
ID XP_002512751.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGP2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442470 PE=4 SV=1
Gene Ontology
ID GO:0046872
description mucin-5ac-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08259: 685226-686231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_690 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000140_410 0.1081104244 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
3 Hb_000200_280 0.1139264269 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
4 Hb_001529_050 0.123497946 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
5 Hb_002273_050 0.12358388 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
6 Hb_000227_060 0.1326601752 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
7 Hb_001104_240 0.1332912886 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
8 Hb_002827_020 0.1364065016 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
9 Hb_000390_100 0.1372824877 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
10 Hb_000905_170 0.1433666942 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
11 Hb_011930_070 0.1448570328 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
12 Hb_006586_030 0.1460417332 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
13 Hb_002007_240 0.1531770041 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
14 Hb_002400_400 0.1549301078 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
15 Hb_003623_070 0.156539409 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_000853_030 0.157365756 - - sucrose synthase 2 [Hevea brasiliensis]
17 Hb_000086_660 0.1591744417 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
18 Hb_002273_080 0.1611038877 - - geranylgeranyl reductase [Monoraphidium neglectum]
19 Hb_009701_010 0.1639114731 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
20 Hb_001902_190 0.1654200925 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_001269_690 Hb_001269_690 Hb_000140_410 Hb_000140_410 Hb_001269_690--Hb_000140_410 Hb_000200_280 Hb_000200_280 Hb_001269_690--Hb_000200_280 Hb_001529_050 Hb_001529_050 Hb_001269_690--Hb_001529_050 Hb_002273_050 Hb_002273_050 Hb_001269_690--Hb_002273_050 Hb_000227_060 Hb_000227_060 Hb_001269_690--Hb_000227_060 Hb_001104_240 Hb_001104_240 Hb_001269_690--Hb_001104_240 Hb_008066_070 Hb_008066_070 Hb_000140_410--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_000140_410--Hb_020805_170 Hb_000905_170 Hb_000905_170 Hb_000140_410--Hb_000905_170 Hb_000140_410--Hb_001529_050 Hb_003623_070 Hb_003623_070 Hb_000140_410--Hb_003623_070 Hb_000976_040 Hb_000976_040 Hb_000200_280--Hb_000976_040 Hb_002827_020 Hb_002827_020 Hb_000200_280--Hb_002827_020 Hb_089140_030 Hb_089140_030 Hb_000200_280--Hb_089140_030 Hb_011716_090 Hb_011716_090 Hb_000200_280--Hb_011716_090 Hb_011512_090 Hb_011512_090 Hb_000200_280--Hb_011512_090 Hb_002110_030 Hb_002110_030 Hb_000200_280--Hb_002110_030 Hb_001529_050--Hb_001104_240 Hb_138585_110 Hb_138585_110 Hb_001529_050--Hb_138585_110 Hb_001529_050--Hb_003623_070 Hb_000086_660 Hb_000086_660 Hb_001529_050--Hb_000086_660 Hb_002273_080 Hb_002273_080 Hb_002273_050--Hb_002273_080 Hb_000215_410 Hb_000215_410 Hb_002273_050--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_002273_050--Hb_000836_120 Hb_002686_280 Hb_002686_280 Hb_002273_050--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002273_050--Hb_129204_060 Hb_000227_060--Hb_000905_170 Hb_000227_060--Hb_000200_280 Hb_000390_100 Hb_000390_100 Hb_000227_060--Hb_000390_100 Hb_049436_010 Hb_049436_010 Hb_000227_060--Hb_049436_010 Hb_001514_130 Hb_001514_130 Hb_000227_060--Hb_001514_130 Hb_000856_180 Hb_000856_180 Hb_000227_060--Hb_000856_180 Hb_006586_030 Hb_006586_030 Hb_001104_240--Hb_006586_030 Hb_001104_240--Hb_000086_660 Hb_001104_240--Hb_002827_020 Hb_001104_240--Hb_000200_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35511 3.8725 0.161259 0.74877 1.22245 1.40141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36047 1.00102 0.90115 3.49476 0.147763

CAGE analysis