Hb_006586_030

Information

Type -
Description -
Location Contig6586: 27978-30807
Sequence    

Annotation

kegg
ID tcc:TCM_031600
description Serine/threonine-protein kinase WNK-related isoform 1
nr
ID XP_012076461.1
description PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
swissprot
ID Q58G01
description Transcription factor bHLH155 OS=Arabidopsis thaliana GN=BHLH155 PE=2 SV=1
trembl
ID A0A067LF64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15317 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase wnk-related isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52858: 28228-30045 , PASA_asmbl_52859: 30362-30598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006586_030 0.0 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
2 Hb_001104_240 0.0870798435 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
3 Hb_002827_020 0.1152271404 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
4 Hb_001524_090 0.1308260247 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
5 Hb_000086_660 0.1393704677 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
6 Hb_001269_690 0.1460417332 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000200_280 0.151273387 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
8 Hb_000283_150 0.1649207486 - - Ankyrin repeat family protein [Theobroma cacao]
9 Hb_002972_020 0.1688071892 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
10 Hb_001427_070 0.1737020267 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
11 Hb_000140_410 0.1749705236 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
12 Hb_011716_090 0.1797937041 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
13 Hb_011512_090 0.1797997882 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
14 Hb_000976_040 0.1838184005 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
15 Hb_001529_050 0.1842119921 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
16 Hb_000733_210 0.1842290359 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
17 Hb_134894_010 0.1852644984 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
18 Hb_011930_070 0.1875170736 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
19 Hb_027445_050 0.1883435385 - - PREDICTED: titin isoform X13 [Jatropha curcas]
20 Hb_008864_090 0.1902232295 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]

Gene co-expression network

sample Hb_006586_030 Hb_006586_030 Hb_001104_240 Hb_001104_240 Hb_006586_030--Hb_001104_240 Hb_002827_020 Hb_002827_020 Hb_006586_030--Hb_002827_020 Hb_001524_090 Hb_001524_090 Hb_006586_030--Hb_001524_090 Hb_000086_660 Hb_000086_660 Hb_006586_030--Hb_000086_660 Hb_001269_690 Hb_001269_690 Hb_006586_030--Hb_001269_690 Hb_000200_280 Hb_000200_280 Hb_006586_030--Hb_000200_280 Hb_001104_240--Hb_000086_660 Hb_001104_240--Hb_001269_690 Hb_001104_240--Hb_002827_020 Hb_001529_050 Hb_001529_050 Hb_001104_240--Hb_001529_050 Hb_001104_240--Hb_000200_280 Hb_002827_020--Hb_000200_280 Hb_011716_090 Hb_011716_090 Hb_002827_020--Hb_011716_090 Hb_000640_130 Hb_000640_130 Hb_002827_020--Hb_000640_130 Hb_001416_020 Hb_001416_020 Hb_002827_020--Hb_001416_020 Hb_000283_150 Hb_000283_150 Hb_002827_020--Hb_000283_150 Hb_001524_090--Hb_002827_020 Hb_001524_090--Hb_001104_240 Hb_000733_210 Hb_000733_210 Hb_001524_090--Hb_000733_210 Hb_027445_050 Hb_027445_050 Hb_001524_090--Hb_027445_050 Hb_134894_010 Hb_134894_010 Hb_001524_090--Hb_134894_010 Hb_000086_660--Hb_001269_690 Hb_000140_410 Hb_000140_410 Hb_000086_660--Hb_000140_410 Hb_011930_070 Hb_011930_070 Hb_000086_660--Hb_011930_070 Hb_000086_660--Hb_002827_020 Hb_001269_690--Hb_000140_410 Hb_001269_690--Hb_000200_280 Hb_001269_690--Hb_001529_050 Hb_002273_050 Hb_002273_050 Hb_001269_690--Hb_002273_050 Hb_000227_060 Hb_000227_060 Hb_001269_690--Hb_000227_060 Hb_000976_040 Hb_000976_040 Hb_000200_280--Hb_000976_040 Hb_089140_030 Hb_089140_030 Hb_000200_280--Hb_089140_030 Hb_000200_280--Hb_011716_090 Hb_011512_090 Hb_011512_090 Hb_000200_280--Hb_011512_090 Hb_002110_030 Hb_002110_030 Hb_000200_280--Hb_002110_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.26629 12.5179 1.07999 3.26082 7.37115 7.14783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92634 3.7804 4.19728 26.7783 0.72628

CAGE analysis