Hb_001104_240

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig1104: 288746-292142
Sequence    

Annotation

kegg
ID rcu:RCOM_0383990
description transcription factor, putative
nr
ID XP_002528594.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9LZS0
description Trihelix transcription factor PTL OS=Arabidopsis thaliana GN=PTL PE=2 SV=1
trembl
ID B9SRH5
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0383990 PE=4 SV=1
Gene Ontology
ID GO:0003677
description trihelix transcription factor ptl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03266: 289775-291395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001104_240 0.0 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
2 Hb_006586_030 0.0870798435 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
3 Hb_000086_660 0.1254126509 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
4 Hb_001269_690 0.1332912886 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002827_020 0.1400626899 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
6 Hb_001529_050 0.1484732434 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
7 Hb_000200_280 0.1538867656 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
8 Hb_001507_100 0.161730802 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000140_410 0.1671540777 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
10 Hb_138585_110 0.1726834866 - - -
11 Hb_001524_090 0.1755292055 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
12 Hb_112023_010 0.1771226171 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
13 Hb_003160_020 0.1773701898 - - PREDICTED: uncharacterized protein LOC105639457 [Jatropha curcas]
14 Hb_002972_020 0.1851275985 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
15 Hb_001427_070 0.1863856555 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
16 Hb_000976_040 0.1873281778 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
17 Hb_000283_150 0.1877330494 - - Ankyrin repeat family protein [Theobroma cacao]
18 Hb_011716_090 0.1886118567 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
19 Hb_000640_130 0.1901872381 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
20 Hb_011512_090 0.1923912437 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001104_240 Hb_001104_240 Hb_006586_030 Hb_006586_030 Hb_001104_240--Hb_006586_030 Hb_000086_660 Hb_000086_660 Hb_001104_240--Hb_000086_660 Hb_001269_690 Hb_001269_690 Hb_001104_240--Hb_001269_690 Hb_002827_020 Hb_002827_020 Hb_001104_240--Hb_002827_020 Hb_001529_050 Hb_001529_050 Hb_001104_240--Hb_001529_050 Hb_000200_280 Hb_000200_280 Hb_001104_240--Hb_000200_280 Hb_006586_030--Hb_002827_020 Hb_001524_090 Hb_001524_090 Hb_006586_030--Hb_001524_090 Hb_006586_030--Hb_000086_660 Hb_006586_030--Hb_001269_690 Hb_006586_030--Hb_000200_280 Hb_000086_660--Hb_001269_690 Hb_000140_410 Hb_000140_410 Hb_000086_660--Hb_000140_410 Hb_011930_070 Hb_011930_070 Hb_000086_660--Hb_011930_070 Hb_000086_660--Hb_002827_020 Hb_001269_690--Hb_000140_410 Hb_001269_690--Hb_000200_280 Hb_001269_690--Hb_001529_050 Hb_002273_050 Hb_002273_050 Hb_001269_690--Hb_002273_050 Hb_000227_060 Hb_000227_060 Hb_001269_690--Hb_000227_060 Hb_002827_020--Hb_000200_280 Hb_011716_090 Hb_011716_090 Hb_002827_020--Hb_011716_090 Hb_000640_130 Hb_000640_130 Hb_002827_020--Hb_000640_130 Hb_001416_020 Hb_001416_020 Hb_002827_020--Hb_001416_020 Hb_000283_150 Hb_000283_150 Hb_002827_020--Hb_000283_150 Hb_001529_050--Hb_000140_410 Hb_138585_110 Hb_138585_110 Hb_001529_050--Hb_138585_110 Hb_003623_070 Hb_003623_070 Hb_001529_050--Hb_003623_070 Hb_001529_050--Hb_000086_660 Hb_000976_040 Hb_000976_040 Hb_000200_280--Hb_000976_040 Hb_089140_030 Hb_089140_030 Hb_000200_280--Hb_089140_030 Hb_000200_280--Hb_011716_090 Hb_011512_090 Hb_011512_090 Hb_000200_280--Hb_011512_090 Hb_002110_030 Hb_002110_030 Hb_000200_280--Hb_002110_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.71344 8.18059 0.63552 2.9237 4.95378 3.30531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.17843 2.90693 1.85567 16.185 0.269873

CAGE analysis