Hb_000086_660

Information

Type -
Description -
Location Contig86: 579364-581418
Sequence    

Annotation

kegg
ID tcc:TCM_007424
description Phytosulfokin receptor 1, putative
nr
ID XP_012069286.1
description PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
swissprot
ID Q8LPB4
description Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1
trembl
ID A0A067L114
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24927 PE=4 SV=1
Gene Ontology
ID GO:0016491
description phytosulfokine receptor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_660 0.0 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
2 Hb_001104_240 0.1254126509 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
3 Hb_006586_030 0.1393704677 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
4 Hb_001269_690 0.1591744417 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000140_410 0.160230452 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
6 Hb_011930_070 0.1759474484 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
7 Hb_002827_020 0.1795935936 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
8 Hb_001529_050 0.1799203837 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
9 Hb_010407_170 0.1853232868 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
10 Hb_000200_280 0.1937670329 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
11 Hb_000645_210 0.199531442 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
12 Hb_008066_070 0.2006760931 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
13 Hb_000640_130 0.2053062001 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
14 Hb_000905_170 0.2055996454 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
15 Hb_138585_110 0.2069411287 - - -
16 Hb_002273_050 0.2074298957 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
17 Hb_001004_110 0.2128968265 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011716_090 0.2140052539 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
19 Hb_002400_350 0.214022415 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_000283_150 0.2149655555 - - Ankyrin repeat family protein [Theobroma cacao]

Gene co-expression network

sample Hb_000086_660 Hb_000086_660 Hb_001104_240 Hb_001104_240 Hb_000086_660--Hb_001104_240 Hb_006586_030 Hb_006586_030 Hb_000086_660--Hb_006586_030 Hb_001269_690 Hb_001269_690 Hb_000086_660--Hb_001269_690 Hb_000140_410 Hb_000140_410 Hb_000086_660--Hb_000140_410 Hb_011930_070 Hb_011930_070 Hb_000086_660--Hb_011930_070 Hb_002827_020 Hb_002827_020 Hb_000086_660--Hb_002827_020 Hb_001104_240--Hb_006586_030 Hb_001104_240--Hb_001269_690 Hb_001104_240--Hb_002827_020 Hb_001529_050 Hb_001529_050 Hb_001104_240--Hb_001529_050 Hb_000200_280 Hb_000200_280 Hb_001104_240--Hb_000200_280 Hb_006586_030--Hb_002827_020 Hb_001524_090 Hb_001524_090 Hb_006586_030--Hb_001524_090 Hb_006586_030--Hb_001269_690 Hb_006586_030--Hb_000200_280 Hb_001269_690--Hb_000140_410 Hb_001269_690--Hb_000200_280 Hb_001269_690--Hb_001529_050 Hb_002273_050 Hb_002273_050 Hb_001269_690--Hb_002273_050 Hb_000227_060 Hb_000227_060 Hb_001269_690--Hb_000227_060 Hb_008066_070 Hb_008066_070 Hb_000140_410--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_000140_410--Hb_020805_170 Hb_000905_170 Hb_000905_170 Hb_000140_410--Hb_000905_170 Hb_000140_410--Hb_001529_050 Hb_003623_070 Hb_003623_070 Hb_000140_410--Hb_003623_070 Hb_002005_090 Hb_002005_090 Hb_011930_070--Hb_002005_090 Hb_012799_120 Hb_012799_120 Hb_011930_070--Hb_012799_120 Hb_001019_180 Hb_001019_180 Hb_011930_070--Hb_001019_180 Hb_011930_070--Hb_000905_170 Hb_002110_030 Hb_002110_030 Hb_011930_070--Hb_002110_030 Hb_011930_070--Hb_000227_060 Hb_002827_020--Hb_000200_280 Hb_011716_090 Hb_011716_090 Hb_002827_020--Hb_011716_090 Hb_000640_130 Hb_000640_130 Hb_002827_020--Hb_000640_130 Hb_001416_020 Hb_001416_020 Hb_002827_020--Hb_001416_020 Hb_000283_150 Hb_000283_150 Hb_002827_020--Hb_000283_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136855 0.409032 0.0583592 0.108697 0.195131 0.0875642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.087601 0.120624 0.0981021 0.568872 0

CAGE analysis