Hb_001529_050

Information

Type -
Description -
Location Contig1529: 41497-43020
Sequence    

Annotation

kegg
ID tcc:TCM_039193
description Ribulose bisphosphate carboxylase family protein
nr
ID XP_012074043.1
description PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
swissprot
ID P10053
description Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
trembl
ID A0A067KN15
description Ribulose bisphosphate carboxylase small chain OS=Jatropha curcas GN=JCGZ_08657 PE=3 SV=1
Gene Ontology
ID GO:0004497
description ribulose bisphosphate carboxylase small chain clone 512-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13133: 41503-42868
cDNA
(Sanger)
(ID:Location)		 001_F03.ab1: 41658-42845 , 008_K07.ab1: 41620-42666

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001529_050 0.0 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
2 Hb_001269_690 0.123497946 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001104_240 0.1484732434 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
4 Hb_000140_410 0.1523932313 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
5 Hb_138585_110 0.1588313165 - - -
6 Hb_003623_070 0.158842847 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000086_660 0.1799203837 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
8 Hb_000640_300 0.1836795729 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
9 Hb_006586_030 0.1842119921 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
10 Hb_001902_190 0.1842359643 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
11 Hb_004230_040 0.1855955466 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000390_100 0.1885146362 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
13 Hb_001507_100 0.1890965033 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001433_180 0.1898587214 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
15 Hb_002301_380 0.190893981 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
16 Hb_001117_070 0.192243288 - - 30S ribosomal protein S19, putative [Ricinus communis]
17 Hb_004788_040 0.1932324238 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000200_280 0.1969483995 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
19 Hb_000796_250 0.2000173635 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
20 Hb_000318_200 0.2022591888 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001529_050 Hb_001529_050 Hb_001269_690 Hb_001269_690 Hb_001529_050--Hb_001269_690 Hb_001104_240 Hb_001104_240 Hb_001529_050--Hb_001104_240 Hb_000140_410 Hb_000140_410 Hb_001529_050--Hb_000140_410 Hb_138585_110 Hb_138585_110 Hb_001529_050--Hb_138585_110 Hb_003623_070 Hb_003623_070 Hb_001529_050--Hb_003623_070 Hb_000086_660 Hb_000086_660 Hb_001529_050--Hb_000086_660 Hb_001269_690--Hb_000140_410 Hb_000200_280 Hb_000200_280 Hb_001269_690--Hb_000200_280 Hb_002273_050 Hb_002273_050 Hb_001269_690--Hb_002273_050 Hb_000227_060 Hb_000227_060 Hb_001269_690--Hb_000227_060 Hb_001269_690--Hb_001104_240 Hb_006586_030 Hb_006586_030 Hb_001104_240--Hb_006586_030 Hb_001104_240--Hb_000086_660 Hb_002827_020 Hb_002827_020 Hb_001104_240--Hb_002827_020 Hb_001104_240--Hb_000200_280 Hb_008066_070 Hb_008066_070 Hb_000140_410--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_000140_410--Hb_020805_170 Hb_000905_170 Hb_000905_170 Hb_000140_410--Hb_000905_170 Hb_000140_410--Hb_003623_070 Hb_000796_250 Hb_000796_250 Hb_138585_110--Hb_000796_250 Hb_004230_040 Hb_004230_040 Hb_138585_110--Hb_004230_040 Hb_001507_100 Hb_001507_100 Hb_138585_110--Hb_001507_100 Hb_138585_110--Hb_001104_240 Hb_010334_020 Hb_010334_020 Hb_138585_110--Hb_010334_020 Hb_003623_070--Hb_001269_690 Hb_004788_040 Hb_004788_040 Hb_003623_070--Hb_004788_040 Hb_001635_050 Hb_001635_050 Hb_003623_070--Hb_001635_050 Hb_003623_070--Hb_002273_050 Hb_000086_660--Hb_006586_030 Hb_000086_660--Hb_001269_690 Hb_000086_660--Hb_000140_410 Hb_011930_070 Hb_011930_070 Hb_000086_660--Hb_011930_070 Hb_000086_660--Hb_002827_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.2222 96.7267 4.34289 15.8854 28.6526 23.0806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.1735 23.4579 32.9062 113.476 0.363748

CAGE analysis