Hb_010334_020

Information

Type -
Description -
Location Contig10334: 7799-9465
Sequence    

Annotation

kegg
ID rcu:RCOM_1080770
description hypothetical protein
nr
ID XP_011071384.1
description PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Sesamum indicum]
swissprot
ID Q9SE37
description Protein RESTRICTED TEV MOVEMENT 1 OS=Arabidopsis thaliana GN=RTM1 PE=1 SV=1
trembl
ID B9RMG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01319: 8289-9118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010334_020 0.0 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Sesamum indicum]
2 Hb_138585_110 0.1800507201 - - -
3 Hb_001148_030 0.1835307566 - - -
4 Hb_000005_250 0.1951547449 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000093_150 0.201229705 - - 6-phosphogluconolactonase, putative [Ricinus communis]
6 Hb_000645_210 0.2122198759 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
7 Hb_004462_010 0.2170147649 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
8 Hb_001104_240 0.2232066073 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
9 Hb_001504_120 0.2268405621 - - -
10 Hb_001433_180 0.2293546398 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
11 Hb_000140_410 0.2315196368 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
12 Hb_000796_250 0.2318025052 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
13 Hb_000318_200 0.2320530053 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
14 Hb_150360_020 0.2321618487 - - PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
15 Hb_000120_390 0.233639538 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
16 Hb_068804_020 0.2362009124 - - hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda]
17 Hb_006586_030 0.2378085962 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
18 Hb_001524_090 0.2435838367 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
19 Hb_003073_180 0.2440798206 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
20 Hb_001206_090 0.2454669926 - - pyruvate decarboxylase [Hevea brasiliensis]

Gene co-expression network

sample Hb_010334_020 Hb_010334_020 Hb_138585_110 Hb_138585_110 Hb_010334_020--Hb_138585_110 Hb_001148_030 Hb_001148_030 Hb_010334_020--Hb_001148_030 Hb_000005_250 Hb_000005_250 Hb_010334_020--Hb_000005_250 Hb_000093_150 Hb_000093_150 Hb_010334_020--Hb_000093_150 Hb_000645_210 Hb_000645_210 Hb_010334_020--Hb_000645_210 Hb_004462_010 Hb_004462_010 Hb_010334_020--Hb_004462_010 Hb_000796_250 Hb_000796_250 Hb_138585_110--Hb_000796_250 Hb_001529_050 Hb_001529_050 Hb_138585_110--Hb_001529_050 Hb_004230_040 Hb_004230_040 Hb_138585_110--Hb_004230_040 Hb_001507_100 Hb_001507_100 Hb_138585_110--Hb_001507_100 Hb_001104_240 Hb_001104_240 Hb_138585_110--Hb_001104_240 Hb_001148_030--Hb_000645_210 Hb_000300_130 Hb_000300_130 Hb_001148_030--Hb_000300_130 Hb_001504_120 Hb_001504_120 Hb_001148_030--Hb_001504_120 Hb_000165_210 Hb_000165_210 Hb_001148_030--Hb_000165_210 Hb_000318_200 Hb_000318_200 Hb_001148_030--Hb_000318_200 Hb_014894_010 Hb_014894_010 Hb_000005_250--Hb_014894_010 Hb_001258_060 Hb_001258_060 Hb_000005_250--Hb_001258_060 Hb_001246_030 Hb_001246_030 Hb_000005_250--Hb_001246_030 Hb_001946_030 Hb_001946_030 Hb_000005_250--Hb_001946_030 Hb_039145_010 Hb_039145_010 Hb_000005_250--Hb_039145_010 Hb_000928_040 Hb_000928_040 Hb_000093_150--Hb_000928_040 Hb_127886_010 Hb_127886_010 Hb_000093_150--Hb_127886_010 Hb_000093_150--Hb_000645_210 Hb_000093_150--Hb_004462_010 Hb_003517_020 Hb_003517_020 Hb_000093_150--Hb_003517_020 Hb_002304_140 Hb_002304_140 Hb_000093_150--Hb_002304_140 Hb_000645_210--Hb_000928_040 Hb_000645_210--Hb_127886_010 Hb_001206_090 Hb_001206_090 Hb_000645_210--Hb_001206_090 Hb_031527_060 Hb_031527_060 Hb_000645_210--Hb_031527_060 Hb_001114_070 Hb_001114_070 Hb_000645_210--Hb_001114_070 Hb_000544_100 Hb_000544_100 Hb_004462_010--Hb_000544_100 Hb_004462_010--Hb_127886_010 Hb_001524_090 Hb_001524_090 Hb_004462_010--Hb_001524_090 Hb_001636_020 Hb_001636_020 Hb_004462_010--Hb_001636_020 Hb_000209_110 Hb_000209_110 Hb_004462_010--Hb_000209_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.58942 12.8297 0.0701777 9.47907 1.71518 7.54936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.62569 6.66435 6.09619 37.3931 0

CAGE analysis