Hb_000093_150

Information

Type -
Description -
Location Contig93: 175143-179850
Sequence    

Annotation

kegg
ID rcu:RCOM_1620240
description 6-phosphogluconolactonase, putative (EC:3.1.1.31)
nr
ID XP_002512062.1
description 6-phosphogluconolactonase, putative [Ricinus communis]
swissprot
ID Q9LMX8
description Probable 6-phosphogluconolactonase 1 OS=Arabidopsis thaliana GN=At1g13700 PE=2 SV=1
trembl
ID B9REC3
description 6-phosphogluconolactonase, putative OS=Ricinus communis GN=RCOM_1620240 PE=4 SV=1
Gene Ontology
ID GO:0017057
description probable 6-phosphogluconolactonase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62822: 175371-178752 , PASA_asmbl_62823: 179010-180031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000093_150 0.0 - - 6-phosphogluconolactonase, putative [Ricinus communis]
2 Hb_000928_040 0.1507526108 - - cytochrome P450, putative [Ricinus communis]
3 Hb_127886_010 0.155774441 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_000645_210 0.1707872639 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
5 Hb_004462_010 0.1761362433 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
6 Hb_003517_020 0.1899784336 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
7 Hb_002304_140 0.1931346078 - - ring finger protein, putative [Ricinus communis]
8 Hb_000120_390 0.1938595728 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
9 Hb_003576_050 0.2002819229 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
10 Hb_001206_090 0.2003056009 - - pyruvate decarboxylase [Hevea brasiliensis]
11 Hb_001828_020 0.2010064757 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
12 Hb_010334_020 0.201229705 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Sesamum indicum]
13 Hb_000209_110 0.2029997067 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
14 Hb_001780_150 0.2039847219 - - ceramidase, putative [Ricinus communis]
15 Hb_009823_010 0.2066048239 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
16 Hb_039145_010 0.2070312003 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
17 Hb_096811_010 0.207973398 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
18 Hb_068804_020 0.2120216654 - - hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda]
19 Hb_000343_100 0.2124068771 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
20 Hb_007919_040 0.2124237175 - - PREDICTED: protein LYK5 [Jatropha curcas]

Gene co-expression network

sample Hb_000093_150 Hb_000093_150 Hb_000928_040 Hb_000928_040 Hb_000093_150--Hb_000928_040 Hb_127886_010 Hb_127886_010 Hb_000093_150--Hb_127886_010 Hb_000645_210 Hb_000645_210 Hb_000093_150--Hb_000645_210 Hb_004462_010 Hb_004462_010 Hb_000093_150--Hb_004462_010 Hb_003517_020 Hb_003517_020 Hb_000093_150--Hb_003517_020 Hb_002304_140 Hb_002304_140 Hb_000093_150--Hb_002304_140 Hb_000928_040--Hb_000645_210 Hb_003576_050 Hb_003576_050 Hb_000928_040--Hb_003576_050 Hb_000928_040--Hb_003517_020 Hb_000367_310 Hb_000367_310 Hb_000928_040--Hb_000367_310 Hb_007919_040 Hb_007919_040 Hb_000928_040--Hb_007919_040 Hb_006717_070 Hb_006717_070 Hb_127886_010--Hb_006717_070 Hb_127886_010--Hb_000645_210 Hb_000227_040 Hb_000227_040 Hb_127886_010--Hb_000227_040 Hb_000395_220 Hb_000395_220 Hb_127886_010--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_127886_010--Hb_001780_150 Hb_011287_010 Hb_011287_010 Hb_127886_010--Hb_011287_010 Hb_001206_090 Hb_001206_090 Hb_000645_210--Hb_001206_090 Hb_031527_060 Hb_031527_060 Hb_000645_210--Hb_031527_060 Hb_001114_070 Hb_001114_070 Hb_000645_210--Hb_001114_070 Hb_000544_100 Hb_000544_100 Hb_004462_010--Hb_000544_100 Hb_004462_010--Hb_127886_010 Hb_001524_090 Hb_001524_090 Hb_004462_010--Hb_001524_090 Hb_001636_020 Hb_001636_020 Hb_004462_010--Hb_001636_020 Hb_000209_110 Hb_000209_110 Hb_004462_010--Hb_000209_110 Hb_000313_370 Hb_000313_370 Hb_003517_020--Hb_000313_370 Hb_003517_020--Hb_003576_050 Hb_000702_060 Hb_000702_060 Hb_003517_020--Hb_000702_060 Hb_003517_020--Hb_007919_040 Hb_002524_030 Hb_002524_030 Hb_003517_020--Hb_002524_030 Hb_001248_030 Hb_001248_030 Hb_002304_140--Hb_001248_030 Hb_007416_150 Hb_007416_150 Hb_002304_140--Hb_007416_150 Hb_004195_110 Hb_004195_110 Hb_002304_140--Hb_004195_110 Hb_009823_010 Hb_009823_010 Hb_002304_140--Hb_009823_010 Hb_000165_210 Hb_000165_210 Hb_002304_140--Hb_000165_210 Hb_000098_310 Hb_000098_310 Hb_002304_140--Hb_000098_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.85947 34.3552 3.1185 21.5053 3.12318 15.1939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2445 3.64892 10.5611 95.3217 7.02555

CAGE analysis