Hb_001636_020

Information

Type -
Description -
Location Contig1636: 8741-10330
Sequence    

Annotation

kegg
ID tcc:TCM_006203
description Serine/threonine-protein kinase PBS1
nr
ID XP_007041272.1
description Serine/threonine-protein kinase PBS1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061E4A8
description Serine/threonine-protein kinase PBS1 OS=Theobroma cacao GN=TCM_006203 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14966: 9755-10047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001636_020 0.0 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
2 Hb_002972_020 0.1576390185 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
3 Hb_000406_060 0.1583122456 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
4 Hb_000021_030 0.1654160829 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
5 Hb_001009_080 0.166746297 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001427_070 0.171677819 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
7 Hb_002836_100 0.1721638993 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
8 Hb_000733_210 0.1732254036 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
9 Hb_002693_060 0.1745760514 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_002260_080 0.1750652314 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
11 Hb_001621_130 0.1780637688 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
12 Hb_000221_120 0.17861838 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
13 Hb_007426_140 0.1797082197 - - ornithine aminotransferase, putative [Ricinus communis]
14 Hb_001006_340 0.1799727444 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
15 Hb_000307_210 0.1803787252 - - Transportin 1 isoform 1 [Theobroma cacao]
16 Hb_001089_040 0.1813411255 transcription factor TF Family: bHLH DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
17 Hb_011716_090 0.182165012 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
18 Hb_000692_160 0.1822649562 - - Transportin 1 isoform 1 [Theobroma cacao]
19 Hb_134469_010 0.1828726573 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
20 Hb_000237_190 0.1842669075 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001636_020 Hb_001636_020 Hb_002972_020 Hb_002972_020 Hb_001636_020--Hb_002972_020 Hb_000406_060 Hb_000406_060 Hb_001636_020--Hb_000406_060 Hb_000021_030 Hb_000021_030 Hb_001636_020--Hb_000021_030 Hb_001009_080 Hb_001009_080 Hb_001636_020--Hb_001009_080 Hb_001427_070 Hb_001427_070 Hb_001636_020--Hb_001427_070 Hb_002836_100 Hb_002836_100 Hb_001636_020--Hb_002836_100 Hb_011512_090 Hb_011512_090 Hb_002972_020--Hb_011512_090 Hb_002972_020--Hb_001427_070 Hb_001089_040 Hb_001089_040 Hb_002972_020--Hb_001089_040 Hb_002972_020--Hb_001009_080 Hb_001232_010 Hb_001232_010 Hb_002972_020--Hb_001232_010 Hb_000140_480 Hb_000140_480 Hb_002972_020--Hb_000140_480 Hb_006829_100 Hb_006829_100 Hb_000406_060--Hb_006829_100 Hb_002374_210 Hb_002374_210 Hb_000406_060--Hb_002374_210 Hb_001006_340 Hb_001006_340 Hb_000406_060--Hb_001006_340 Hb_000106_020 Hb_000106_020 Hb_000406_060--Hb_000106_020 Hb_003913_110 Hb_003913_110 Hb_000406_060--Hb_003913_110 Hb_002005_080 Hb_002005_080 Hb_000406_060--Hb_002005_080 Hb_011716_020 Hb_011716_020 Hb_000021_030--Hb_011716_020 Hb_000470_080 Hb_000470_080 Hb_000021_030--Hb_000470_080 Hb_011310_160 Hb_011310_160 Hb_000021_030--Hb_011310_160 Hb_000613_080 Hb_000613_080 Hb_000021_030--Hb_000613_080 Hb_002028_170 Hb_002028_170 Hb_000021_030--Hb_002028_170 Hb_001675_070 Hb_001675_070 Hb_000021_030--Hb_001675_070 Hb_000692_160 Hb_000692_160 Hb_001009_080--Hb_000692_160 Hb_001269_140 Hb_001269_140 Hb_001009_080--Hb_001269_140 Hb_001009_080--Hb_001232_010 Hb_003906_170 Hb_003906_170 Hb_001009_080--Hb_003906_170 Hb_001761_130 Hb_001761_130 Hb_001009_080--Hb_001761_130 Hb_001427_070--Hb_000140_480 Hb_001427_070--Hb_001761_130 Hb_000152_660 Hb_000152_660 Hb_001427_070--Hb_000152_660 Hb_006831_040 Hb_006831_040 Hb_001427_070--Hb_006831_040 Hb_002391_210 Hb_002391_210 Hb_001427_070--Hb_002391_210 Hb_002110_030 Hb_002110_030 Hb_001427_070--Hb_002110_030 Hb_007426_140 Hb_007426_140 Hb_002836_100--Hb_007426_140 Hb_083799_010 Hb_083799_010 Hb_002836_100--Hb_083799_010 Hb_001160_070 Hb_001160_070 Hb_002836_100--Hb_001160_070 Hb_000395_220 Hb_000395_220 Hb_002836_100--Hb_000395_220 Hb_075315_010 Hb_075315_010 Hb_002836_100--Hb_075315_010 Hb_033772_070 Hb_033772_070 Hb_002836_100--Hb_033772_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95141 1.70211 0.875889 1.8071 1.98015 2.94812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.374748 0.491374 1.61559 5.97237 0.719587

CAGE analysis