Hb_000106_020

Information

Type -
Description -
Location Contig106: 20615-30813
Sequence    

Annotation

kegg
ID rcu:RCOM_0902410
description WD-repeat protein, putative
nr
ID XP_012073107.1
description PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
swissprot
ID Q0WV90
description Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3
trembl
ID A0A067KLL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06088 PE=4 SV=1
Gene Ontology
ID GO:0006355
description protein topless

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01960: 20575-31048 , PASA_asmbl_01963: 20648-23584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000106_020 0.0 - - PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
2 Hb_000122_080 0.1178053742 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
3 Hb_033554_020 0.1190879951 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
4 Hb_001373_160 0.1233337517 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
5 Hb_000406_060 0.130646662 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
6 Hb_098315_090 0.1341524975 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
7 Hb_143960_010 0.1350879311 - - -
8 Hb_002025_270 0.1368333954 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
9 Hb_002374_210 0.1377858923 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
10 Hb_000243_130 0.1385704841 - - hypothetical protein M569_10795, partial [Genlisea aurea]
11 Hb_012528_020 0.1395682121 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Jatropha curcas]
12 Hb_000165_120 0.1415643649 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
13 Hb_000365_030 0.1425317609 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
14 Hb_002687_060 0.1432924138 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
15 Hb_000184_150 0.1433374564 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
16 Hb_005323_010 0.1439295018 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
17 Hb_001375_040 0.1441477367 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
18 Hb_044486_040 0.1447963399 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
19 Hb_007123_050 0.1448948455 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
20 Hb_000256_020 0.1478031297 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000106_020 Hb_000106_020 Hb_000122_080 Hb_000122_080 Hb_000106_020--Hb_000122_080 Hb_033554_020 Hb_033554_020 Hb_000106_020--Hb_033554_020 Hb_001373_160 Hb_001373_160 Hb_000106_020--Hb_001373_160 Hb_000406_060 Hb_000406_060 Hb_000106_020--Hb_000406_060 Hb_098315_090 Hb_098315_090 Hb_000106_020--Hb_098315_090 Hb_143960_010 Hb_143960_010 Hb_000106_020--Hb_143960_010 Hb_002596_060 Hb_002596_060 Hb_000122_080--Hb_002596_060 Hb_001733_030 Hb_001733_030 Hb_000122_080--Hb_001733_030 Hb_006501_010 Hb_006501_010 Hb_000122_080--Hb_006501_010 Hb_006829_100 Hb_006829_100 Hb_000122_080--Hb_006829_100 Hb_019840_030 Hb_019840_030 Hb_000122_080--Hb_019840_030 Hb_002259_080 Hb_002259_080 Hb_000122_080--Hb_002259_080 Hb_033554_020--Hb_001373_160 Hb_000243_130 Hb_000243_130 Hb_033554_020--Hb_000243_130 Hb_006618_090 Hb_006618_090 Hb_033554_020--Hb_006618_090 Hb_000102_050 Hb_000102_050 Hb_033554_020--Hb_000102_050 Hb_000994_020 Hb_000994_020 Hb_033554_020--Hb_000994_020 Hb_033554_020--Hb_006501_010 Hb_000134_250 Hb_000134_250 Hb_001373_160--Hb_000134_250 Hb_012940_040 Hb_012940_040 Hb_001373_160--Hb_012940_040 Hb_004724_370 Hb_004724_370 Hb_001373_160--Hb_004724_370 Hb_001171_030 Hb_001171_030 Hb_001373_160--Hb_001171_030 Hb_010287_030 Hb_010287_030 Hb_001373_160--Hb_010287_030 Hb_000406_060--Hb_006829_100 Hb_002374_210 Hb_002374_210 Hb_000406_060--Hb_002374_210 Hb_001006_340 Hb_001006_340 Hb_000406_060--Hb_001006_340 Hb_003913_110 Hb_003913_110 Hb_000406_060--Hb_003913_110 Hb_002005_080 Hb_002005_080 Hb_000406_060--Hb_002005_080 Hb_000823_010 Hb_000823_010 Hb_098315_090--Hb_000823_010 Hb_098315_090--Hb_000122_080 Hb_002025_270 Hb_002025_270 Hb_098315_090--Hb_002025_270 Hb_004657_030 Hb_004657_030 Hb_098315_090--Hb_004657_030 Hb_000455_130 Hb_000455_130 Hb_098315_090--Hb_000455_130 Hb_005260_040 Hb_005260_040 Hb_143960_010--Hb_005260_040 Hb_002375_110 Hb_002375_110 Hb_143960_010--Hb_002375_110 Hb_007481_030 Hb_007481_030 Hb_143960_010--Hb_007481_030 Hb_054885_020 Hb_054885_020 Hb_143960_010--Hb_054885_020 Hb_000120_520 Hb_000120_520 Hb_143960_010--Hb_000120_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4806 21.1628 21.5331 17.8931 20.1115 14.591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31447 1.78784 3.98253 34.4795 13.0612

CAGE analysis