Hb_005260_040

Information

Type -
Description -
Location Contig5260: 36267-44898
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10560g
description POPTRDRAFT_825506; hypothetical protein
nr
ID XP_012071817.1
description PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IJK3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s10560g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47006: 36464-43347 , PASA_asmbl_47007: 44888-45031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005260_040 0.0 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
2 Hb_005725_170 0.0756831329 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
3 Hb_000158_130 0.0828628487 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
4 Hb_011671_230 0.0941091882 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003529_130 0.0977538261 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
6 Hb_003388_100 0.0978195591 - - 16S rRNA processing protein RimM [Psychrobacter phenylpyruvicus]
7 Hb_000120_620 0.1011049743 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
8 Hb_002374_320 0.102347121 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
9 Hb_002762_130 0.1037590475 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
10 Hb_000375_130 0.1040053334 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
11 Hb_001493_040 0.1047229749 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
12 Hb_003739_030 0.1052643906 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
13 Hb_000010_360 0.1061166603 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
14 Hb_000184_150 0.1063315306 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
15 Hb_015099_010 0.1071378327 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
16 Hb_002784_010 0.1084518471 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
17 Hb_000307_210 0.1086203705 - - Transportin 1 isoform 1 [Theobroma cacao]
18 Hb_002375_110 0.1098863458 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
19 Hb_003097_180 0.1106519251 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
20 Hb_086287_010 0.1114158214 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005260_040 Hb_005260_040 Hb_005725_170 Hb_005725_170 Hb_005260_040--Hb_005725_170 Hb_000158_130 Hb_000158_130 Hb_005260_040--Hb_000158_130 Hb_011671_230 Hb_011671_230 Hb_005260_040--Hb_011671_230 Hb_003529_130 Hb_003529_130 Hb_005260_040--Hb_003529_130 Hb_003388_100 Hb_003388_100 Hb_005260_040--Hb_003388_100 Hb_000120_620 Hb_000120_620 Hb_005260_040--Hb_000120_620 Hb_002784_010 Hb_002784_010 Hb_005725_170--Hb_002784_010 Hb_003739_030 Hb_003739_030 Hb_005725_170--Hb_003739_030 Hb_001493_040 Hb_001493_040 Hb_005725_170--Hb_001493_040 Hb_001452_220 Hb_001452_220 Hb_005725_170--Hb_001452_220 Hb_028487_010 Hb_028487_010 Hb_005725_170--Hb_028487_010 Hb_003124_130 Hb_003124_130 Hb_000158_130--Hb_003124_130 Hb_000136_090 Hb_000136_090 Hb_000158_130--Hb_000136_090 Hb_000375_130 Hb_000375_130 Hb_000158_130--Hb_000375_130 Hb_012180_050 Hb_012180_050 Hb_000158_130--Hb_012180_050 Hb_000098_130 Hb_000098_130 Hb_000158_130--Hb_000098_130 Hb_001454_320 Hb_001454_320 Hb_000158_130--Hb_001454_320 Hb_005214_150 Hb_005214_150 Hb_011671_230--Hb_005214_150 Hb_000949_010 Hb_000949_010 Hb_011671_230--Hb_000949_010 Hb_000768_180 Hb_000768_180 Hb_011671_230--Hb_000768_180 Hb_000176_130 Hb_000176_130 Hb_011671_230--Hb_000176_130 Hb_011671_230--Hb_002784_010 Hb_000574_510 Hb_000574_510 Hb_011671_230--Hb_000574_510 Hb_000021_020 Hb_000021_020 Hb_003529_130--Hb_000021_020 Hb_003529_130--Hb_000120_620 Hb_003029_130 Hb_003029_130 Hb_003529_130--Hb_003029_130 Hb_080147_040 Hb_080147_040 Hb_003529_130--Hb_080147_040 Hb_011609_170 Hb_011609_170 Hb_003529_130--Hb_011609_170 Hb_001508_020 Hb_001508_020 Hb_003529_130--Hb_001508_020 Hb_003388_100--Hb_000158_130 Hb_015099_010 Hb_015099_010 Hb_003388_100--Hb_015099_010 Hb_000261_290 Hb_000261_290 Hb_003388_100--Hb_000261_290 Hb_003388_100--Hb_000375_130 Hb_003097_180 Hb_003097_180 Hb_003388_100--Hb_003097_180 Hb_004899_070 Hb_004899_070 Hb_000120_620--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_620--Hb_004970_160 Hb_000120_620--Hb_000098_130 Hb_000120_620--Hb_003097_180 Hb_000120_620--Hb_000261_290 Hb_001178_150 Hb_001178_150 Hb_000120_620--Hb_001178_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.83202 11.7044 6.00238 4.86175 8.37045 13.5318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75461 2.07229 2.30341 9.35449 4.53173

CAGE analysis