Hb_003388_100

Information

Type -
Description -
Location Contig3388: 62847-68143
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_028859338.1
description 16S rRNA processing protein RimM [Psychrobacter phenylpyruvicus]
swissprot
ID A5WBW9
description Ribosome maturation factor RimM OS=Psychrobacter sp. (strain PRwf-1) GN=rimM PE=3 SV=1
trembl
ID F1VV84
description Ribosome maturation factor RimM OS=Oxalobacteraceae bacterium IMCC9480 GN=rimM PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosome maturation factor rimm

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35411: 19745-68798 , PASA_asmbl_35412: 67085-67876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003388_100 0.0 - - 16S rRNA processing protein RimM [Psychrobacter phenylpyruvicus]
2 Hb_000158_130 0.0861449749 - - PREDICTED: uncharacterized protein LOC105647950 isoform X1 [Jatropha curcas]
3 Hb_005260_040 0.0978195591 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
4 Hb_015099_010 0.103881431 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
5 Hb_000261_290 0.110840389 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
6 Hb_000375_130 0.1116649867 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
7 Hb_003097_180 0.112249935 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
8 Hb_003529_130 0.1139749832 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
9 Hb_003124_130 0.1149440459 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
10 Hb_000098_130 0.1152503786 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
11 Hb_001028_070 0.1159358206 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
12 Hb_001034_070 0.1164189043 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_029142_010 0.1205161771 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
14 Hb_000136_090 0.1213353342 - - programmed cell death protein, putative [Ricinus communis]
15 Hb_000340_160 0.1249669412 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
16 Hb_005725_170 0.1252744921 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
17 Hb_174821_010 0.1261044195 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
18 Hb_000567_010 0.1268853568 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
19 Hb_000120_620 0.1280354178 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
20 Hb_004970_160 0.1281052412 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003388_100 Hb_003388_100 Hb_000158_130 Hb_000158_130 Hb_003388_100--Hb_000158_130 Hb_005260_040 Hb_005260_040 Hb_003388_100--Hb_005260_040 Hb_015099_010 Hb_015099_010 Hb_003388_100--Hb_015099_010 Hb_000261_290 Hb_000261_290 Hb_003388_100--Hb_000261_290 Hb_000375_130 Hb_000375_130 Hb_003388_100--Hb_000375_130 Hb_003097_180 Hb_003097_180 Hb_003388_100--Hb_003097_180 Hb_003124_130 Hb_003124_130 Hb_000158_130--Hb_003124_130 Hb_000136_090 Hb_000136_090 Hb_000158_130--Hb_000136_090 Hb_000158_130--Hb_000375_130 Hb_012180_050 Hb_012180_050 Hb_000158_130--Hb_012180_050 Hb_000098_130 Hb_000098_130 Hb_000158_130--Hb_000098_130 Hb_001454_320 Hb_001454_320 Hb_000158_130--Hb_001454_320 Hb_005725_170 Hb_005725_170 Hb_005260_040--Hb_005725_170 Hb_005260_040--Hb_000158_130 Hb_011671_230 Hb_011671_230 Hb_005260_040--Hb_011671_230 Hb_003529_130 Hb_003529_130 Hb_005260_040--Hb_003529_130 Hb_000120_620 Hb_000120_620 Hb_005260_040--Hb_000120_620 Hb_015099_010--Hb_000375_130 Hb_000832_220 Hb_000832_220 Hb_015099_010--Hb_000832_220 Hb_003029_130 Hb_003029_130 Hb_015099_010--Hb_003029_130 Hb_002392_030 Hb_002392_030 Hb_015099_010--Hb_002392_030 Hb_015099_010--Hb_003124_130 Hb_000209_070 Hb_000209_070 Hb_015099_010--Hb_000209_070 Hb_000261_290--Hb_000098_130 Hb_004899_070 Hb_004899_070 Hb_000261_290--Hb_004899_070 Hb_000261_290--Hb_000120_620 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_000261_290--Hb_003097_180 Hb_006588_050 Hb_006588_050 Hb_000261_290--Hb_006588_050 Hb_000088_130 Hb_000088_130 Hb_000375_130--Hb_000088_130 Hb_000375_130--Hb_002392_030 Hb_133047_010 Hb_133047_010 Hb_000375_130--Hb_133047_010 Hb_009112_010 Hb_009112_010 Hb_000375_130--Hb_009112_010 Hb_174821_010 Hb_174821_010 Hb_000375_130--Hb_174821_010 Hb_003097_180--Hb_000120_620 Hb_003097_180--Hb_000098_130 Hb_003097_180--Hb_004899_070 Hb_003097_180--Hb_006588_050 Hb_001178_150 Hb_001178_150 Hb_003097_180--Hb_001178_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15761 1.82292 0.970837 0.917182 1.78287 3.0763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.284172 0.715135 0.572204 1.76566 0.544805

CAGE analysis