Hb_143960_010

Information

Type -
Description -
Location Contig143960: 347-1610
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11616: 766-1688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143960_010 0.0 - - -
2 Hb_005260_040 0.1224511351 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
3 Hb_002375_110 0.1312795817 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
4 Hb_007481_030 0.1329903023 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
5 Hb_054885_020 0.1344894088 - - -
6 Hb_000106_020 0.1350879311 - - PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
7 Hb_000120_520 0.1382196723 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
8 Hb_000184_150 0.1389827573 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
9 Hb_003025_050 0.1427105951 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
10 Hb_011671_230 0.1429038982 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004040_040 0.1439664634 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
12 Hb_002890_100 0.1459120845 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
13 Hb_164458_010 0.1508098494 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_000175_350 0.1508572339 - - phopholipase d alpha, putative [Ricinus communis]
15 Hb_000077_220 0.151211742 - - PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
16 Hb_007982_050 0.1534138535 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
17 Hb_002374_320 0.1535501613 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
18 Hb_000599_130 0.1548356938 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
19 Hb_003529_130 0.1554746494 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
20 Hb_000327_080 0.1569941876 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]

Gene co-expression network

sample Hb_143960_010 Hb_143960_010 Hb_005260_040 Hb_005260_040 Hb_143960_010--Hb_005260_040 Hb_002375_110 Hb_002375_110 Hb_143960_010--Hb_002375_110 Hb_007481_030 Hb_007481_030 Hb_143960_010--Hb_007481_030 Hb_054885_020 Hb_054885_020 Hb_143960_010--Hb_054885_020 Hb_000106_020 Hb_000106_020 Hb_143960_010--Hb_000106_020 Hb_000120_520 Hb_000120_520 Hb_143960_010--Hb_000120_520 Hb_005725_170 Hb_005725_170 Hb_005260_040--Hb_005725_170 Hb_000158_130 Hb_000158_130 Hb_005260_040--Hb_000158_130 Hb_011671_230 Hb_011671_230 Hb_005260_040--Hb_011671_230 Hb_003529_130 Hb_003529_130 Hb_005260_040--Hb_003529_130 Hb_003388_100 Hb_003388_100 Hb_005260_040--Hb_003388_100 Hb_000120_620 Hb_000120_620 Hb_005260_040--Hb_000120_620 Hb_000176_130 Hb_000176_130 Hb_002375_110--Hb_000176_130 Hb_061878_010 Hb_061878_010 Hb_002375_110--Hb_061878_010 Hb_002375_110--Hb_054885_020 Hb_009367_080 Hb_009367_080 Hb_002375_110--Hb_009367_080 Hb_001989_050 Hb_001989_050 Hb_002375_110--Hb_001989_050 Hb_028472_010 Hb_028472_010 Hb_002375_110--Hb_028472_010 Hb_002370_040 Hb_002370_040 Hb_007481_030--Hb_002370_040 Hb_007223_010 Hb_007223_010 Hb_007481_030--Hb_007223_010 Hb_167381_020 Hb_167381_020 Hb_007481_030--Hb_167381_020 Hb_007481_030--Hb_000120_520 Hb_002997_160 Hb_002997_160 Hb_007481_030--Hb_002997_160 Hb_001034_070 Hb_001034_070 Hb_054885_020--Hb_001034_070 Hb_008143_070 Hb_008143_070 Hb_054885_020--Hb_008143_070 Hb_054885_020--Hb_005260_040 Hb_004040_040 Hb_004040_040 Hb_054885_020--Hb_004040_040 Hb_000537_140 Hb_000537_140 Hb_054885_020--Hb_000537_140 Hb_000122_080 Hb_000122_080 Hb_000106_020--Hb_000122_080 Hb_033554_020 Hb_033554_020 Hb_000106_020--Hb_033554_020 Hb_001373_160 Hb_001373_160 Hb_000106_020--Hb_001373_160 Hb_000406_060 Hb_000406_060 Hb_000106_020--Hb_000406_060 Hb_098315_090 Hb_098315_090 Hb_000106_020--Hb_098315_090 Hb_000958_150 Hb_000958_150 Hb_000120_520--Hb_000958_150 Hb_000152_640 Hb_000152_640 Hb_000120_520--Hb_000152_640 Hb_000700_060 Hb_000700_060 Hb_000120_520--Hb_000700_060 Hb_002284_170 Hb_002284_170 Hb_000120_520--Hb_002284_170 Hb_013749_020 Hb_013749_020 Hb_000120_520--Hb_013749_020 Hb_056987_010 Hb_056987_010 Hb_000120_520--Hb_056987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3851 23.9979 14.0922 12.4613 18.3003 21.9418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37942 1.35616 3.71412 21.4138 6.27224

CAGE analysis